View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1372_low_26 (Length: 298)
Name: NF1372_low_26
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 51919663 - 51919405
Alignment:
| Q |
31 |
ttggaaaatccaaatttcagtttaataacaaacaagaatcaccccacatggaccaatgttgttgatggcgcaatcagcgcaatataagtccatacaccca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51919663 |
ttggaaaatccaaatttcagtttaataacaaacaagaatcaccccacatggaccaatgttgttgatggcgcaatcagcgcaatataagtccatacaccca |
51919564 |
T |
|
| Q |
131 |
tcaattttgaatcacttatggacaaaccatttttcaattccaaataaataaaaacaactaacatttatcatttttgtcaacnnnnnnnnnctaacattta |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51919563 |
tcaattttgaatcacttatggacaaaccatttttcaattccaaataaataaaaacaactaacatttatcatttttgtcaa--aaaaaaaactaacattta |
51919466 |
T |
|
| Q |
231 |
tcattgtcaacctaagaaagttttaataagatgataaaaatttcttttgccatctgtggtg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51919465 |
tcattgtcaacctaagaaagttttaataagatgataaaaatttcttttgccatctttggtg |
51919405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University