View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_low_32 (Length: 266)
Name: NF1372_low_32
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 71 - 256
Target Start/End: Complemental strand, 11062860 - 11062676
Alignment:
| Q |
71 |
tgcaccaaagggggaataatttaggttgtatttacaagggttggctaggattaaatgtataatttcatggttcttggctaggatttttgaaatgttgttg |
170 |
Q |
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| T |
11062860 |
tgcaccaaagggggaataatttaggttgtatttacaagggttggctaggattaaatgtataatttcatggttcttggctaggatttttgaa-tgttgttg |
11062762 |
T |
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| Q |
171 |
aatacttattgttaaatcacttgataacgagcaatgttgaagtttagggttgtgataatatgcaattttgttggttattacctttg |
256 |
Q |
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| T |
11062761 |
aatacttattgttaaatcacttgataacgagcaatgttcaagtttagggttgtgataatatgcaattttgttggttattacctttg |
11062676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11062935 - 11062895
Alignment:
| Q |
1 |
ttgatatgcatgatgatagaagcaaaagaacaagaagtatg |
41 |
Q |
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| T |
11062935 |
ttgatatgcatgatgatagaagcaaaagaacaagaagtatg |
11062895 |
T |
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