View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1372_low_33 (Length: 259)

Name: NF1372_low_33
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1372_low_33
NF1372_low_33
[»] chr2 (7 HSPs)
chr2 (18-259)||(34993971-34994212)
chr2 (49-106)||(34985703-34985760)
chr2 (215-259)||(5040760-5040804)
chr2 (215-257)||(5367218-5367260)
chr2 (175-254)||(31018570-31018655)
chr2 (215-255)||(18570998-18571038)
chr2 (163-215)||(34221536-34221588)
[»] chr6 (9 HSPs)
chr6 (215-259)||(7378005-7378049)
chr6 (161-253)||(7265588-7265686)
chr6 (175-213)||(13689533-13689571)
chr6 (219-257)||(30851630-30851668)
chr6 (215-257)||(33001280-33001322)
chr6 (215-248)||(9617460-9617493)
chr6 (215-248)||(9629409-9629442)
chr6 (214-259)||(12690441-12690486)
chr6 (174-257)||(28152078-28152166)
[»] scaffold0004 (1 HSPs)
scaffold0004 (161-213)||(92773-92825)
[»] chr5 (6 HSPs)
chr5 (163-215)||(42893328-42893380)
chr5 (215-253)||(17925167-17925205)
chr5 (215-257)||(28588665-28588707)
chr5 (215-257)||(42029778-42029820)
chr5 (176-213)||(17123029-17123066)
chr5 (215-259)||(43564907-43564951)
[»] scaffold0050 (1 HSPs)
scaffold0050 (214-257)||(70303-70346)
[»] chr1 (6 HSPs)
chr1 (178-213)||(40285695-40285730)
chr1 (215-257)||(29163372-29163414)
chr1 (215-257)||(38078652-38078694)
chr1 (155-215)||(31672934-31672995)
chr1 (215-259)||(30749866-30749910)
chr1 (215-259)||(30771317-30771361)
[»] chr8 (3 HSPs)
chr8 (194-248)||(9097854-9097908)
chr8 (215-259)||(4786327-4786371)
chr8 (215-255)||(31236570-31236610)
[»] chr7 (2 HSPs)
chr7 (215-253)||(48438572-48438610)
chr7 (218-258)||(26022539-26022579)
[»] chr4 (3 HSPs)
chr4 (215-257)||(54580014-54580056)
chr4 (215-255)||(36409505-36409545)
chr4 (215-255)||(36423671-36423711)
[»] chr3 (3 HSPs)
chr3 (215-257)||(35222964-35223006)
chr3 (215-257)||(40993326-40993368)
chr3 (217-253)||(13414497-13414533)
[»] scaffold0376 (1 HSPs)
scaffold0376 (216-248)||(6339-6371)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 34994212 - 34993971
Alignment:
Q  18 tatatatataaagtgaaatgagaatagatacaaagaccaatttgagaaaacatacaaaggacacgacaaataaacctagcaagaattttcacactaaaaa 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34994212 tatatatatcaagtgaaatgagaatagatacaaagaccaatttgagaaaacatagaaaggacacgacaaataaacctagcaagaattttcacactaaaaa 34994113  T
Q  118 catatttaactcttacgtatatgcttaacaacctttcgaaacgatctatgaagcacggacatggacactgatacaccaacaccgctaataatttgaaaca 217  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  34994112 cgtatttaactcttacgtatatccttaacaacctttcgaaacgatctatgaagcacggacacggacactgatacgccaacaccgctaataatttgaaaca 34994013  T
Q  218 taattcaatgtaattatacgtgtcggtgtcgaacacgacatg 259  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  34994012 taattcaatgtaattatatgtgtcagtgtcgaacacgacatg 34993971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 34985760 - 34985703
Alignment:
Q  49 aaagaccaatttgagaaaacatacaaaggacacgacaaataaacctagcaagaatttt 106  Q
    |||||||||||||| || |||||||||||||| ||||| | || ||||||||||||||    
T  34985760 aaagaccaatttgacaatacatacaaaggacaagacaagttaaactagcaagaatttt 34985703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 5040760 - 5040804
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgacatg 259  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||    
T  5040760 acataattcaatgtaattacaagtgtcggtgtcggacacgacatg 5040804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 5367218 - 5367260
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    |||||||||| |||||||||| |||||||||||| ||||||||    
T  5367218 acataattcagtgtaattatatgtgtcggtgtcggacacgaca 5367260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 31018570 - 31018655
Alignment:
Q  175 gacatggacactgatacaccaacaccgctaataattt--gaa----acataattcaatgtaattatacgtgtcggtgtcgaacacg 254  Q
    |||||||||||||| || |||||||||||||||||||  |||    |||| ||| | |||||||||| |||||||||||| |||||    
T  31018570 gacatggacactgacacgccaacaccgctaataatttcagaaaatcacatgatttagtgtaattataggtgtcggtgtcggacacg 31018655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 18570998 - 18571038
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacga 255  Q
    ||||||||||||||||| ||| ||||| |||||||||||||    
T  18570998 acataattcaatgtaatcatatgtgtcagtgtcgaacacga 18571038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 34221588 - 34221536
Alignment:
Q  163 ctatgaagcacggacatggacactgatacaccaacaccgctaataatttgaaa 215  Q
    |||||||||||||||| ||| |||||||  || |||| |||||||||||||||    
T  34221588 ctatgaagcacggacacggatactgatatgccgacacagctaataatttgaaa 34221536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 7378005 - 7378049
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgacatg 259  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  7378005 acataattcaatgtaattatatgtgtcggtgtcggacacgacatg 7378049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 7265686 - 7265588
Alignment:
Q  161 atctatgaagcacggacatggacactgatacaccaacaccgctaataatttga------aacataattcaatgtaattatacgtgtcggtgtcgaacac 253  Q
    |||||||||||||| |   ||||||||| || |||||||||||||||||||||       |||||||||| |||||||||| |||||||||||| ||||    
T  7265686 atctatgaagcacgtattcggacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 13689571 - 13689533
Alignment:
Q  175 gacatggacactgatacaccaacaccgctaataatttga 213  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13689571 gacatggacactgatacatcaacaccgctaataatttga 13689533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 30851630 - 30851668
Alignment:
Q  219 aattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  30851630 aattcaatgtaattatatgtgtcggtgtcggacacgaca 30851668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 33001322 - 33001280
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    |||||||| |||||||||||| |||||||||||| ||||||||    
T  33001322 acataattaaatgtaattatatgtgtcggtgtcggacacgaca 33001280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 9617460 - 9617493
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcg 248  Q
    ||||||||||||||||||||| ||||||||||||    
T  9617460 acataattcaatgtaattatatgtgtcggtgtcg 9617493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 9629409 - 9629442
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcg 248  Q
    ||||||||||||||||||||| ||||||||||||    
T  9629409 acataattcaatgtaattatatgtgtcggtgtcg 9629442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 12690441 - 12690486
Alignment:
Q  214 aacataattcaatgtaattatacgtgtcggtgtcgaacacgacatg 259  Q
    |||||||||||||||||||||| |||||| ||||| |||| |||||    
T  12690441 aacataattcaatgtaattatatgtgtcgatgtcggacactacatg 12690486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 28152078 - 28152166
Alignment:
Q  174 ggacatggacactgatacaccaacaccgctaataatttgaaa-----cataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    ||||| ||||||||| || || |||  |||||||||||||||     ||||||||| |||||||| | |||||||||||| ||||||||    
T  28152078 ggacacggacactgacacgccgacaaagctaataatttgaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgaca 28152166  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 92773 - 92825
Alignment:
Q  161 atctatgaagcacggacatggacactgatacaccaacaccgctaataatttga 213  Q
    |||||||||||||||| | ||||||||| || || ||||||||||||||||||    
T  92773 atctatgaagcacggatacggacactgacacgccgacaccgctaataatttga 92825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 42893328 - 42893380
Alignment:
Q  163 ctatgaagcacggacatggacactgatacaccaacaccgctaataatttgaaa 215  Q
    |||||||||||||| |||||||| || ||||| |||| |||||||||||||||    
T  42893328 ctatgaagcacggatatggacacggacacaccgacacagctaataatttgaaa 42893380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 17925205 - 17925167
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacac 253  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  17925205 acataattcaatgtaataatatgtgtcggtgtcgaacac 17925167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 28588707 - 28588665
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    |||||||||| |||||||||| |||||||||||| ||||||||    
T  28588707 acataattcagtgtaattataggtgtcggtgtcggacacgaca 28588665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 42029778 - 42029820
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    ||||||||||||||||||||| || ||||||||| ||||||||    
T  42029778 acataattcaatgtaattatatgtatcggtgtcggacacgaca 42029820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 17123029 - 17123066
Alignment:
Q  176 acatggacactgatacaccaacaccgctaataatttga 213  Q
    ||||||||||||| || |||||||||||||||||||||    
T  17123029 acatggacactgacacgccaacaccgctaataatttga 17123066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 43564907 - 43564951
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgacatg 259  Q
    |||||||| | |||||||||| |||||||||||| ||||||||||    
T  43564907 acataatttagtgtaattataagtgtcggtgtcggacacgacatg 43564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 70303 - 70346
Alignment:
Q  214 aacataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||    
T  70303 aacataattcagtgtaattataagtgtcggtgtcggacacgaca 70346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 40285730 - 40285695
Alignment:
Q  178 atggacactgatacaccaacaccgctaataatttga 213  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40285730 atggacactgacacaccaacaccgctaataatttga 40285695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 29163414 - 29163372
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    |||||||||||| |||||||| |||||||||||| ||||||||    
T  29163414 acataattcaatttaattatatgtgtcggtgtcggacacgaca 29163372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 38078694 - 38078652
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    ||||||||||||||||||| | |||||||||||| ||||||||    
T  38078694 acataattcaatgtaattacaagtgtcggtgtcggacacgaca 38078652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 31672995 - 31672934
Alignment:
Q  155 gaaacgatctatgaagcacggacatgg-acactgatacaccaacaccgctaataatttgaaa 215  Q
    |||| ||||||||||||||||| | || ||||||| ||||| |||| |||||||||||||||    
T  31672995 gaaaggatctatgaagcacggatacgggacactgacacaccgacacagctaataatttgaaa 31672934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 30749866 - 30749910
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgacatg 259  Q
    |||||||||| |||||||||| |||||||||||| |||| |||||    
T  30749866 acataattcagtgtaattatatgtgtcggtgtcggacaccacatg 30749910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 30771317 - 30771361
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgacatg 259  Q
    |||||||||| |||||||||| |||||||||||| |||| |||||    
T  30771317 acataattcagtgtaattatatgtgtcggtgtcggacaccacatg 30771361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 9097908 - 9097854
Alignment:
Q  194 caacaccgctaataatttgaaacataattcaatgtaattatacgtgtcggtgtcg 248  Q
    |||||| | ||||||||||| |||||||||||| |||||||| ||| ||||||||    
T  9097908 caacactggtaataatttgagacataattcaatataattatatgtgccggtgtcg 9097854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 4786371 - 4786327
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgacatg 259  Q
    |||||||||| |||||||||| |||||||||||| | ||||||||    
T  4786371 acataattcagtgtaattatatgtgtcggtgtcggatacgacatg 4786327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 31236610 - 31236570
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacga 255  Q
    ||||||||||||||||||||| ||||||||| || ||||||    
T  31236610 acataattcaatgtaattatatgtgtcggtgacggacacga 31236570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 48438572 - 48438610
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacac 253  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  48438572 acataattcaatgtaattacacgtgtcggtgtcaaacac 48438610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 26022579 - 26022539
Alignment:
Q  218 taattcaatgtaattatacgtgtcggtgtcgaacacgacat 258  Q
    ||||||| ||||| |||| ||||||||||||||||||||||    
T  26022579 taattcagtgtaactatatgtgtcggtgtcgaacacgacat 26022539  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 54580056 - 54580014
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    |||||||||| |||||||||| |||||||||||| ||||||||    
T  54580056 acataattcagtgtaattataagtgtcggtgtcggacacgaca 54580014  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 36409545 - 36409505
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacga 255  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  36409545 acataatttagtgtaattataggtgtcggtgtcgaacacga 36409505  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 36423711 - 36423671
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacga 255  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  36423711 acataatttagtgtaattataggtgtcggtgtcgaacacga 36423671  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 35222964 - 35223006
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||    
T  35222964 acataattcaatgtaattatatgtgtcggtgtcggacatgaca 35223006  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 40993368 - 40993326
Alignment:
Q  215 acataattcaatgtaattatacgtgtcggtgtcgaacacgaca 257  Q
    |||||||||| |||||||||| |||||||||||| ||||||||    
T  40993368 acataattcagtgtaattatatgtgtcggtgtcggacacgaca 40993326  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 13414497 - 13414533
Alignment:
Q  217 ataattcaatgtaattatacgtgtcggtgtcgaacac 253  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  13414497 ataattcaatgtaattatatgtgtcggtgtcggacac 13414533  T

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Target: scaffold0376 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 6339 - 6371
Alignment:
Q  216 cataattcaatgtaattatacgtgtcggtgtcg 248  Q
    |||||||||||||||||||| ||||||||||||    
T  6339 cataattcaatgtaattatatgtgtcggtgtcg 6371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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