View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_low_35 (Length: 251)
Name: NF1372_low_35
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_low_35 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 7154880 - 7154645
Alignment:
| Q |
15 |
aataacaaagttaaagttttatttgtacttatgatatagtataatacaatttacattgtttcaaatggccatatattacaaatttattatttctatttat |
114 |
Q |
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| T |
7154880 |
aataacaaagttaaagttttatttgtacttgtgatatagtataatacaatttacatagtttcaaatg-ccatatattacaaatttattatatctatttat |
7154782 |
T |
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| Q |
115 |
gaaaagctacatgacataaaagtatatacgtactattattatgatgagcataatgaaatcacataacataaacattaggaatcaaacacaactcattttc |
214 |
Q |
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| T |
7154781 |
gaaaagctacatgacataaaagtatatacgtactattattatgatgagcataatgaaatcacataacataaacattaggaatcaaacacaactcattttc |
7154682 |
T |
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| Q |
215 |
ccttccaactgccaatccaacattttcagtcatatcc |
251 |
Q |
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| T |
7154681 |
ccttccaactgccaatccaacattttcagtcatatcc |
7154645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 7141945 - 7141901
Alignment:
| Q |
181 |
cataaacattaggaatcaaacacaactcattttcccttccaactg |
225 |
Q |
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| T |
7141945 |
cataaacagttggaatcaaacacaactcatttttccttccaactg |
7141901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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