View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1372_low_5 (Length: 474)

Name: NF1372_low_5
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1372_low_5
NF1372_low_5
[»] chr8 (6 HSPs)
chr8 (185-462)||(3777657-3777934)
chr8 (188-440)||(3701183-3701438)
chr8 (188-468)||(3707922-3708205)
chr8 (188-440)||(3719459-3719714)
chr8 (188-468)||(3769990-3770273)
chr8 (188-468)||(33004902-33005185)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 185 - 462
Target Start/End: Original strand, 3777657 - 3777934
Alignment:
Q  185 agatcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcat 284  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3777657 agatcttcaattctttgtcgaatctcacttcgttcttcacctatcattagatctctaatcaccttagcaatttcatctctttcagctatgccaatctcat 3777756  T
Q  285 taaatcttaccttcaaaccaactccgagtccctctagcaaaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac 384  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  3777757 taaatcttaccttcaaaccaactccgagtccctctaacaacatagcattcattctttgctctgaaaacaatggccaagttatcattggcactccgaacac 3777856  T
Q  385 aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaagcgtggcttacgatttgagtctg 462  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  3777857 aagactctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtggcttaggatttgagtctg 3777934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 188 - 440
Target Start/End: Complemental strand, 3701438 - 3701183
Alignment:
Q  188 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa 287  Q
    ||||| ||||||||||||||||||||||||||||| || | |||||||||| ||| |||||||||||||||  ||||||| || ||||||||||||||||    
T  3701438 tcttcaattctttgtcgaatctcacttcgttcttctccgagcattagatctttaaccaccttagcaatttccactctttctgcaatgccattctcattaa 3701339  T
Q  288 atcttaccttcaaaccaactccgagtccctct---agcaaaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac 384  Q
    || | | ||||||||| |||  ||||||||||   | ||||| ||||||||||||||| |||  ||| |||||||| ||||||| ||||||||| |||||    
T  3701338 atttgatcttcaaacccactttgagtccctctgtcaacaaaacagcattcattctttgctcgccaaataatggccatgttatcattggcactcctaacac 3701239  T
Q  385 aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaag 440  Q
     | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3701238 gatactctcaagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaag 3701183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 188 - 468
Target Start/End: Complemental strand, 3708205 - 3707922
Alignment:
Q  188 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa 287  Q
    ||||| |||||||||||||||||||| |||||||| || | |||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||||||    
T  3708205 tcttcaattctttgtcgaatctcactccgttcttctccgagcattagatgtctaaccaccttagcaatttcctctctttctgcaatgccattctcattaa 3708106  T
Q  288 atcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac 384  Q
    || ||| ||||||||| |||   ||||||||||  |   |||||||||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||    
T  3708105 attttatcttcaaacccactttaagtccctctactattaaaatagcattcattatttgatcaccaaacaatggccaagttatcattggcactccggacac 3708006  T
Q  385 aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaagcgtggcttacgatttgagtctgtggtgc 468  Q
    || ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||  ||| |||| |||||  || ||||||||    
T  3708005 aatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattttggtttgtggtgc 3707922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 188 - 440
Target Start/End: Complemental strand, 3719714 - 3719459
Alignment:
Q  188 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa 287  Q
    |||||||||||||||||||||||||| |||| ||| || | |||||||||  ||| ||||||||||||||| |||||||| || || |||||||||||||    
T  3719714 tcttccattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccaccttagcaatttcctctctttctgcaattccattctcattaa 3719615  T
Q  288 atcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac 384  Q
    || ||| ||||||||| |||   ||||||||||  |   ||||||||||||||||||| ||   |||||||||||||||||||| |||||||||| ||||    
T  3719614 attttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttgatcaccaaacaatggccaagttatcattggcactccggacac 3719515  T
Q  385 aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaag 440  Q
    || ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  3719514 aatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaag 3719459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 188 - 468
Target Start/End: Original strand, 3769990 - 3770273
Alignment:
Q  188 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa 287  Q
    ||||| |||||||||||||||||||| |||||||| || | |||||||||| ||| ||||||||||||||| |||||||| || ||| ||||||||||||    
T  3769990 tcttcaattctttgtcgaatctcactccgttcttctccgagcattagatctttaaccaccttagcaatttcctctctttctgcaatgtcattctcattaa 3770089  T
Q  288 atcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac 384  Q
    || ||| ||||||||| |||   ||||||||||  |   ||||||||||||||||||| ||   ||||||||||||||||| || |||||||||  ||||    
T  3770090 attttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttgatcaccaaacaatggccaagttaccattggcactcccgacac 3770189  T
Q  385 aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaagcgtggcttacgatttgagtctgtggtgc 468  Q
    || ||||||||||||  ||||||||||||||||||||||||||||||| ||||||  ||| |||| |||||  || ||||||||    
T  3770190 aatactctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattttggtttgtggtgc 3770273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 188 - 468
Target Start/End: Original strand, 33004902 - 33005185
Alignment:
Q  188 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatc-tctttcagctatgccattctcatta 286  Q
    ||||| |||||||||  ||| ||||| | ||||||||| | ||||| |||||||||||||||||||||||| || |||||| || |||||| ||||||||    
T  33004902 tcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatcaccttagcaatttcctcctctttctgcaatgccactctcatta 33005001  T
Q  287 aatcttaccttcaaaccaactccgagtccctctag---caaaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaaca 383  Q
    | | ||||||||||||| ||   |||||||||||    |||||||||||||| |||||| |||  |||||| ||||||||||||| |||||||||  ||     
T  33005002 att-ttaccttcaaacccaccttgagtccctctattaacaaaatagcattcaatctttgctcgccaaacaacggccaagttatcattggcactcccgacg 33005100  T
Q  384 caagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaagcgtggcttacgatttgagtctgtggtgc 468  Q
    |||  ||||| |||||  ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  33005101 caatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtggtgc 33005185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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