View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_low_6 (Length: 441)
Name: NF1372_low_6
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 25081740 - 25082146
Alignment:
| Q |
5 |
atgtggagataatattacataagagcaaaattttaaactgcagatatagtcacgattctgatcgcaccaagaactttgatattatgtagaactgtagaat |
104 |
Q |
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|||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||| |
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| T |
25081740 |
atgtcgagataataatacataa-agcaaaattttgaactgcagatatagtcacgattctgattgcaccacgatctttgatattatgtagaattgtagaac |
25081838 |
T |
|
| Q |
105 |
tgcaatctcaaatctcaatcccagttccagaaacaaacaaaaaagttcatgttggcgcgatccagaacattgtctggctcaaaaaattagtaataaaaat |
204 |
Q |
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||||||||||||| ||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
25081839 |
tgcaatctcaaatatcaatcccagttccaaaatcaaaaaaaaaagttcatgttggcgtgatccagaacattgtatggctcaaacaattagtaataaaaat |
25081938 |
T |
|
| Q |
205 |
gcccgttggaaatagatctattcaagaacaaccttcttcggaagggaattgatgacatccttcaaagtaacattatcaggaagaggttctccaattttct |
304 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25081939 |
gctcgttggaaatagatctattcaagaacaaccttcttcggaagggaattgatgacatccttcaaagtcacattatcaggaagaggttctccaattttct |
25082038 |
T |
|
| Q |
305 |
taaaaccatattgttcgcatatttgttttcggtattcactggtgctttcagcaggagatggtgcagctggaattgccacagcttttatgatggaagcttt |
404 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25082039 |
taaaaccatatcgttcgcatatttgttttcggtattcaccggtgctttcagcaggagatggtgcagctggaattgccacagcttttatgatggaagcttt |
25082138 |
T |
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| Q |
405 |
tttcctat |
412 |
Q |
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|||||||| |
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| T |
25082139 |
tttcctat |
25082146 |
T |
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