View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_low_8 (Length: 401)
Name: NF1372_low_8
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 25081364 - 25081753
Alignment:
| Q |
7 |
tccaacaatatcttctaccaatttattctttgaaaatgctttgtgagcacaatcatgccctataacaaaaagctgtgtggtggaaaacaaaaaagagtac |
106 |
Q |
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| T |
25081364 |
tccaacaatatcttctaccaatttattctttgaaaatgctttgtgagcacaatcatgccctataacaaaaagctgtgtcgtggaaaacaaaaaagagtac |
25081463 |
T |
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| Q |
107 |
aattaataactgtggaacttgcaaagaattgattaatacacatgatactaacccctgttgctgcagtccctgtaaatgcccaagccagaggaagcagata |
206 |
Q |
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| T |
25081464 |
aattaatatctgtggaacttgcaaagaattgattaatacacatgatactaacccctgttgctgcagtccctgtaaacgcccaagcgagaggaagcagata |
25081563 |
T |
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| Q |
207 |
ccaaggcgctttcgaaatcaaaaatatccccaatgcataagacgtcactgatatcaaaacttttctccatgctttcatttcatctatttcaaacaccttt |
306 |
Q |
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| T |
25081564 |
ccaaggcgctttcgaaatcaaaaatatccccaatgcataagacgtcactgatatcaaaacttttctccatgctttcatttcatctatttcaaacaccttt |
25081663 |
T |
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| Q |
307 |
taccaatgcacaaagnnnnnnnnnnnnnntgtatataacaaatctatatatacacaatgctatttggagacgaaaaaatgtggagataata |
397 |
Q |
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| T |
25081664 |
taccaatacacaaag-aaaaatgaaaaaatgcatgtaacaaatctatatatacacaattctatttggagacgaaaaaatgtcgagataata |
25081753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 54620702 - 54620770
Alignment:
| Q |
7 |
tccaacaatatcttctaccaatttattctttgaaaatgctttgtgagcacaatcatgccctataacaaa |
75 |
Q |
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| T |
54620702 |
tccaacaatgtcttctaccaatttgtttgttgaaaatgatttgtgagcgcaatcatgtcctataacaaa |
54620770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 54620926 - 54620999
Alignment:
| Q |
153 |
actaacccctgttgctgcagtccctgtaaatgcccaagccagaggaagcagataccaaggcgctttcgaaatca |
226 |
Q |
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||||||||| ||| | ||||||||||| | ||||||||||||||||| |||||||| || ||||| ||||||| |
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| T |
54620926 |
actaaccccagttacagcagtccctgtccaagcccaagccagaggaagtagataccagggtgctttagaaatca |
54620999 |
T |
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