View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1373-INSERTION-1 (Length: 391)

Name: NF1373-INSERTION-1
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1373-INSERTION-1
NF1373-INSERTION-1
[»] chr3 (1 HSPs)
chr3 (8-391)||(20755177-20755571)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 20755177 - 20755571
Alignment:
Q  8 ttgtgtgtgaggtagagaatatctctcctagggttcttggttggttgaaccatttgaacctttatcaaggggcttttcgaatctccttttagggttagat 107  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20755177 ttgtttgtgaggtagagaacatccctcctagggttcttggttggttgaaccatgtgaacctttatcaaggggcttttcgaatctccttttagggttagat 20755276  T
Q  108 cttgaaaaattgtttgaaattttttaattgaatcatagaaaaagatcctt----------cacttcacttatgttaccatctctataattgaag-ttgtc 196  Q
    |||||||||||||||| ||   || |||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||| ||||     
T  20755277 cttgaaaaattgtttggaaaaattaaattgaatcatagaaaaagatccttatcttagattcacttcacttatgttaccatctctataattgaaggttgtt 20755376  T
Q  197 aaacacaagtttgttcctaactactcaaacacaagtttgtcaaaaataaaagaagtaatgacatacacaaatgtataactaggaaaagaaatactaagag 296  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20755377 aaaaacaagtttgttcctaactactcaaacacaagtttgtcaaaaataaaagaagtaatgacatacacaaatgtataactaggaaaagaaatactaagag 20755476  T
Q  297 aagaaccaccaacaaaaaagatatactaagagaagaataaaattgctaataaattaattgacataataccattgcatatttctccttctagcaat 391  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20755477 aagaatcaccaacaaaaaaaatatactaagagaagaataaaattgctaataaattaattgacataataccattgcacatttctccttctagcaat 20755571  T

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