View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1373-INSERTION-3 (Length: 342)
Name: NF1373-INSERTION-3
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373-INSERTION-3 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 38052034 - 38052368
Alignment:
| Q |
8 |
cttattgtccgttgtagatggagaagagtcttctcgatgaaaaaatcaattcatattacaaaactaaaactaaacttctattatattgctccagaattgc |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38052034 |
cttattgttcgttgtagatggagaagagtcttctcgatgaagaaatcaattcatattacaaaactaaaactaaacttctattatattgctctagaattgc |
38052133 |
T |
|
| Q |
108 |
cctaaacttcaaactcttgaaattttcttcnnnnnnnggttcaacaaaacctttctctaaaaagtatctccaaaaccgccggattttaaacatagttcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38052134 |
cctaaacttcaaactcttgaaattttcttctttttttggttcaacaaaatctttctctaaaaagtatctccaaaactgccggattttaaacatagttcca |
38052233 |
T |
|
| Q |
208 |
tcaaactttttgatagagtctgaaactaaaatacaaaccataacaaattgtttaaatctctgtaagttgatgttttggtgctctttaaattgggatttaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38052234 |
tcaaactttttgatagagtctgaaactaaaatacaaaccataacaaattgtttaaatctctgtaagttgatgttttggtgctctttaaattgggatttaa |
38052333 |
T |
|
| Q |
308 |
ttatattaaaaagcatacaacctagtgattatgat |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38052334 |
ttatattaaaaagcatacaacctagtgattatgat |
38052368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 40254122 - 40254061
Alignment:
| Q |
152 |
caaaacctttctctaaaaagtatctccaaaaccgccggattttaaacatagttccatcaaactt |
215 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||| | || ||||||||||||||| ||||||||| |
|
|
| T |
40254122 |
caaaacttttctctaaaa--tatctccataaccactgggttttaaacatagttcgatcaaactt |
40254061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University