View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1373-INSERTION-5 (Length: 713)

Name: NF1373-INSERTION-5
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1373-INSERTION-5
NF1373-INSERTION-5
[»] chr3 (7 HSPs)
chr3 (8-713)||(47451481-47452186)
chr3 (358-670)||(11015115-11015421)
chr3 (346-670)||(11005552-11005873)
chr3 (17-165)||(11015641-11015789)
chr3 (373-664)||(11024133-11024418)
chr3 (17-173)||(11006070-11006226)
chr3 (17-138)||(11024680-11024801)
[»] chr4 (56 HSPs)
chr4 (209-658)||(48852669-48853106)
chr4 (444-713)||(45365801-45366070)
chr4 (496-684)||(49043778-49043960)
chr4 (373-674)||(48147333-48147634)
chr4 (534-672)||(7790381-7790519)
chr4 (128-265)||(48705381-48705518)
chr4 (401-672)||(45371696-45371961)
chr4 (445-666)||(45384520-45384747)
chr4 (516-670)||(48870843-48870997)
chr4 (516-670)||(48876147-48876301)
chr4 (516-670)||(48886529-48886683)
chr4 (532-672)||(7773447-7773587)
chr4 (126-254)||(45384901-45385029)
chr4 (535-670)||(48156053-48156188)
chr4 (534-672)||(7771696-7771834)
chr4 (528-673)||(48899035-48899180)
chr4 (593-674)||(49038498-49038579)
chr4 (128-248)||(48147756-48147876)
chr4 (532-655)||(7765941-7766064)
chr4 (108-175)||(37827106-37827173)
chr4 (386-489)||(49043994-49044097)
chr4 (582-672)||(7878732-7878822)
chr4 (594-672)||(7908663-7908741)
chr4 (537-622)||(7237415-7237500)
chr4 (500-652)||(37826632-37826784)
chr4 (532-655)||(7786763-7786886)
chr4 (593-664)||(48864395-48864466)
chr4 (594-664)||(7813838-7813908)
chr4 (401-507)||(48705169-48705275)
chr4 (394-637)||(48903119-48903359)
chr4 (585-673)||(49048176-49048264)
chr4 (113-172)||(48891313-48891372)
chr4 (126-181)||(49044302-49044357)
chr4 (594-664)||(7800998-7801068)
chr4 (114-183)||(7773930-7773999)
chr4 (118-183)||(7877632-7877697)
chr4 (111-172)||(48863128-48863189)
chr4 (396-440)||(49041002-49041046)
chr4 (396-439)||(48863413-48863456)
chr4 (405-508)||(49048361-49048464)
chr4 (36-166)||(48870366-48870496)
chr4 (36-166)||(48886052-48886182)
chr4 (395-564)||(50669244-50669416)
chr4 (114-183)||(7237824-7237893)
chr4 (126-171)||(48852577-48852622)
chr4 (106-175)||(48875740-48875809)
chr4 (66-183)||(50250894-50251011)
chr4 (128-176)||(45366323-45366371)
chr4 (29-176)||(50668869-50669016)
chr4 (126-165)||(50672412-50672451)
chr4 (503-565)||(43596154-43596216)
chr4 (126-172)||(48898633-48898679)
chr4 (535-617)||(50250403-50250485)
chr4 (532-565)||(7878045-7878078)
chr4 (128-173)||(49048698-49048743)
chr4 (395-436)||(50250629-50250670)
[»] chr6 (3 HSPs)
chr6 (344-673)||(21015938-21016261)
chr6 (112-172)||(21015706-21015766)
chr6 (396-475)||(14197479-14197558)
[»] chr5 (8 HSPs)
chr5 (516-670)||(9120046-9120200)
chr5 (505-638)||(179330-179463)
chr5 (125-261)||(29696125-29696261)
chr5 (582-686)||(29688478-29688582)
chr5 (401-477)||(29696401-29696477)
chr5 (593-661)||(42561966-42562034)
chr5 (396-440)||(42562181-42562225)
chr5 (120-172)||(42562446-42562498)
[»] chr8 (10 HSPs)
chr8 (528-665)||(15349178-15349315)
chr8 (353-487)||(4031710-4031844)
chr8 (532-622)||(4962191-4962281)
chr8 (66-264)||(15348716-15348914)
chr8 (126-165)||(4032032-4032071)
chr8 (532-565)||(12200641-12200674)
chr8 (532-565)||(12445069-12445102)
chr8 (589-637)||(4031583-4031631)
chr8 (209-266)||(12195303-12195360)
chr8 (209-266)||(12439731-12439788)
[»] chr7 (2 HSPs)
chr7 (69-175)||(48883655-48883761)
chr7 (585-655)||(48884176-48884246)
[»] chr1 (3 HSPs)
chr1 (107-172)||(24310078-24310143)
chr1 (396-477)||(24310370-24310451)
chr1 (587-624)||(24310570-24310607)


Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 8 - 713
Target Start/End: Complemental strand, 47452186 - 47451481
Alignment:
Q  8 gatagtgcctctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaattaaagggtcatgtaaagggtttatgcttttaagtt 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  47452186 gatagtgcttctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaattaaaggttcatgtagagggtttatacttttaagtt 47452087  T
Q  108 gttcttcaaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattg 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47452086 gttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattg 47451987  T
Q  208 gtttggatatgacgagttaacagatgattacttggtggttttaatgtccgatgatccaaactcagctaattttttatcacacttagagnnnnnnncgttg 307  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  47451986 gtttgggtatgacgagttaacagatgattacttagtggttttaatgtccgatgatccaaactcagctaattttttatcacacttagagtttttttcgttg 47451887  T
Q  308 agagctaatgcatggaaagaaattgagtgtactacaggtactcacttcccttatatgaattcatgtgatgatcctagagtagggtggctcttcaatgggg 407  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47451886 agagctaatgcatggaaagaaattgagtgtactactggtactcacttcccttatatgaattcatgtgatgatcctagagtagggtggctcttcaatgggg 47451787  T
Q  408 ctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatga 507  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47451786 ctatttattggttggcttttcgtcatgatatatccatgaatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatga 47451687  T
Q  508 ttttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtg 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47451686 ttttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtg 47451587  T
Q  608 atgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattccctctcattacttttacctcttaacctctacaaaaa 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  47451586 atgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgatggcattccctctcagtacttttaccccttaacctctacaaaaa 47451487  T
Q  708 gtggtg 713  Q
    ||||||    
T  47451486 gtggtg 47451481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 358 - 670
Target Start/End: Complemental strand, 11015421 - 11015115
Alignment:
Q  358 ttatatgaattcatgtgatgatcctagagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgct 457  Q
    |||||||||| ||  ||||||||| | |||||||  |||||| |||||| ||||| |||||||  ||||||| |||||| |||| ||||||||||||| |    
T  11015421 ttatatgaatgcaaatgatgatcccaaagtagggatgctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgtt 11015322  T
Q  458 gcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttc 557  Q
    |  ||||||||| ||||||| ||| |||| ||  || |||| ||||||| ||||||| |||||||||   |||||| ||||||| |||||||||||||||    
T  11015321 ggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttc 11015222  T
Q  558 ttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttc 657  Q
    | |||||| ||| | |||      |  |||  | ||||||||||||||| |||||||||||||||||  ||||||||||||  || |||||||| || ||    
T  11015221 taagtctatgggctatgg------aggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatc 11015128  T
Q  658 tattgatggcatt 670  Q
    |||||||| ||||    
T  11015127 tattgatgacatt 11015115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 346 - 670
Target Start/End: Complemental strand, 11005873 - 11005552
Alignment:
Q  346 tactcacttcccttat---atgaattcatgtgatgatcctagagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatcc 442  Q
    ||||||||||||||||   |||||| ||  ||||||||| |  ||||||  ||| || |||||| ||||| |||||||  ||||||| |||||| | ||     
T  11005873 tactcacttcccttattatatgaatgcaaatgatgatcccaaggtagggacgctttttaatgggactattcattggttctcttttcgccatgatttgtca 11005774  T
Q  443 atggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtggg 542  Q
    ||||||||||||| ||  ||||||||| ||||||| ||| |||||||  ||  ||| ||| ||| |||||| ||||||||||   |||||| |||||||     
T  11005773 atggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccatatggttttgatcatgaacctatagattgtgatttgtgga 11005674  T
Q  543 tatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaa 642  Q
    ||||||||||||||||||||||| ||| | |||         |||| | | ||||||||||||| |||||||||||||||||  |||||||||||   ||    
T  11005673 tatttggagaatttcttagtctatgggctatgg------gggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaa 11005580  T
Q  643 gactcttgttctttctattgatggcatt 670  Q
    | |||||||  | |||||||||||||||    
T  11005579 ggctcttgtcttatctattgatggcatt 11005552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 11015789 - 11015641
Alignment:
Q  17 tctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaa 116  Q
    |||||||||| ||||||||||||| ||| |||  ||||| | | || ||||||||||||| | ||||||| ||| |||||  |||| | |||||||||||    
T  11015789 tctacttcactgaaccttaattttatgcctccagaatcttattctagtcttgaaattaaaagttcatgtagaggatttatagttttgacttgttcttcaa 11015690  T
Q  117 acatctacatatggaatccatccattggagttcacaaacaaataccttt 165  Q
    |||||||| ||||||||||||| | ||||  ||||||||||||||||||    
T  11015689 acatctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 373 - 664
Target Start/End: Complemental strand, 11024418 - 11024133
Alignment:
Q  373 tgatgatcctagagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatg 472  Q
    ||||||||| | |||||||   ||||| ||||||  |||| |||||||  |||||||  ||||| |||| ||||||||||||  ||| ||||||||| ||    
T  11024418 tgatgatcccacagtagggacactctttaatgggaatattcattggttctcttttcgcaatgatttatcaatggatgttattattgcctttgatttagtg 11024319  T
Q  473 gaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttg 572  Q
    |||||  || |||| ||  ||  ||| ||||||| |||||| ||||||||||   |||||| ||||||| |||||||||||||||| |||||| ||| |     
T  11024318 gaaagggaacttttggagatgccttttccagatggttttgatcatgaacctatggattgtgatttgtggatatttggagaatttctcagtctatgggcta 11024219  T
Q  573 tggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgat 664  Q
    |||   |      ||  | | ||||||||||||| |||||||||||||||||  |||||||||||   ||||||||||| || |||||||||    
T  11024218 tgggggg------tgtaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcctatctattgat 11024133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 11006226 - 11006070
Alignment:
Q  17 tctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaa 116  Q
    |||||||||| |||| |||||||| | |||||| ||||| | | |||||||||||||||| | ||||||  ||| |||||  |||| | || ||||| |     
T  11006226 tctacttcactgaactttaattttatacttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctttac 11006127  T
Q  117 acatctacatatggaatccatccattggagttcacaaacaaatacctttgcctcctt 173  Q
    |||||||| ||||||||||||||| ||||  || || |||||||||||| |||||||    
T  11006126 acatctacctatggaatccatccactggacgtctcagacaaataccttttcctcctt 11006070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 11024801 - 11024680
Alignment:
Q  17 tctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaa 116  Q
    ||||||||||  |||||||||||| |||||||| ||||| | | |||||||||||||||| | || |||| ||| |||||  |||| | ||||||||| |    
T  11024801 tctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttgacttgttcttcca 11024702  T
Q  117 acatctacatatggaatccatc 138  Q
    |||| ||  |||||||||||||    
T  11024701 acatttatctatggaatccatc 11024680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 3e-65; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 209 - 658
Target Start/End: Original strand, 48852669 - 48853106
Alignment:
Q  209 tttggatatgacgagttaacagatgattacttggtggttttaatgtccgatgatccaaactcagctaattttttatcacacttagagnnnnnnncgttga 308  Q
    ||||| ||||||  || ||| |||||||||||||| |||||||||||| ||||| ||| || ||||||| ||| |||||| ||||||       | ||||    
T  48852669 tttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatgatacaaccttagctaatgtttcatcacatttagagtttttctcattga 48852768  T
Q  309 gagctaatgcatggaaagaaattgagtgtactacaggtactcacttcccttatatgaattcatgtgatgatcctagagtagggtggctcttcaatggggc 408  Q
    ||||||||||||||||||||||||||         ||||||||||||||||| |||||| | |  |||||||| |||||||||| ||| || ||||||||    
T  48852769 gagctaatgcatggaaagaaattgag---------ggtactcacttcccttacatgaatgcctccgatgatcccagagtagggtcgctttttaatggggc 48852859  T
Q  409 tatttattggttggcttttcgtcatgatatatccatg---gatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagat 505  Q
    |||| ||||||||||||||||||||||| || | |||    |||||||||  || ||||||||||||||||| ||| |||||||  ||  |||||| |||    
T  48852860 tattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagagttgtctttgccggat 48852959  T
Q  506 gattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatggg 605  Q
    |||||| |||||||||||||| |||| | ||||||||||||| |||||||||| ||| || ||||  |||         |||||| ||||||||||||||    
T  48852960 gatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggtcatgg------gggatgatacagttgaaatatggg 48853053  T
Q  606 tgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttct 658  Q
    | |||||||||||||||||   ||||||||||   ||||||||||||||||||    
T  48853054 tcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 48853106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 444 - 713
Target Start/End: Complemental strand, 45366070 - 45365801
Alignment:
Q  444 tggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggt 543  Q
    |||||||||||  | | ||||||||||| ||||| ||| ||||  || |  |||| |||||||| ||| ||| |||||||  | ||||||||||||||||    
T  45366070 tggatgttattatttcctttgatttaatcgaaaggaaacttttttatattcattttccagatgagtttaaccgtgaacctcacgattgtggtttgtgggt 45365971  T
Q  544 atttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaag 643  Q
    ||||||||||||| | ||| |  ||| | |||||| | ||||||||| ||||||||||||||||||||||||||| |||||   ||||||||||  ||||    
T  45365970 atttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaag 45365871  T
Q  644 actcttgttctttctattgatggcattccctctcattacttttacctcttaacctctacaaaaagtggtg 713  Q
    ||||  |||||| ||||||||||||||||| |||| ||||||| ||  |||  |||||||||||| ||||    
T  45365870 actcacgttcttcctattgatggcattcccactcaatacttttcccctttatgctctacaaaaagcggtg 45365801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 496 - 684
Target Start/End: Complemental strand, 49043960 - 49043778
Alignment:
Q  496 tttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggatt-gtcataatgatatagt 594  Q
    |||||||| ||||||||| |||||||||||  |||||| ||||||||||||||| ||| |||||||| ||       |||| | | || |||||||||||    
T  49043960 tttgccaggtgattttgaacatgaacctacagattgtgatttgtgggtatttggtgaacttcttagtgta-------tggactagacagaatgatatagt 49043868  T
Q  595 tgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattccctctcattactt 684  Q
    ||||||||||||||||||||||||||||||  ||||||| |||   |||||||||||| |||||||||||| ||||||| ||||||||||    
T  49043867 tgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcattactt 49043778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 373 - 674
Target Start/End: Complemental strand, 48147634 - 48147333
Alignment:
Q  373 tgatgatcctagagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatg 472  Q
    |||||| | |||||||||||  || || | |||||||||| |||||||||||||||   ||||| || | | ||||||||||  ||||||||||||||||    
T  48147634 tgatgagcatagagtagggtcactttttagtggggctattcattggttggcttttcacaatgatttagcaagggatgttattattgcatttgatttaatg 48147535  T
Q  473 gaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttg 572  Q
    ||||| | | |||||||  ||  ||| ||||||| ||||| || |||| ||    || ||  |||||||||||||||| ||||||| ||||||| || |     
T  48147534 gaaaggagacttttagagatgccttttccagatggttttggccttgaatctgaatatagtcatttgtgggtatttggacaatttctcagtctaacgggta 48147435  T
Q  573 tggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattcc 672  Q
    |||||  | | |||   | |||||||||||||||||||||||||||||||||  |||||||||||   |||||||||  | | |||||||||||||||||    
T  48147434 tggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcattcc 48147335  T
Q  673 ct 674  Q
    ||    
T  48147334 ct 48147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 534 - 672
Target Start/End: Original strand, 7790381 - 7790519
Alignment:
Q  534 gtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtc 633  Q
    ||||||||||||||||||||||||| ||| || | | |  ||||| | ||||||||| | |||||||||||||||||||||||||||||||  |||||||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  634 ttgggaaaagactcttgttctttctattgatggcattcc 672  Q
    ||||   || |||||||||||||||||||||| ||||||    
T  7790481 ttggactaaaactcttgttctttctattgatgccattcc 7790519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 48705518 - 48705381
Alignment:
Q  128 tggaatccatccattggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattggtttggatatgacgagttaa 227  Q
    ||||||||||| | |||| |||||||||||||||||||| | |||||||||||| || |||||||| | |||||  || | |||||||||||  ||| ||    
T  48705518 tggaatccatctactggatttcacaaacaaatacctttgtcaccttttggttccgatttagatgcagaatatttccatggttttggatatgatcagtcaa 48705419  T
Q  228 cagatgattacttggtggttttaatgtccgatgatcca 265  Q
    |||||||||||||||| |||| |||||||| |||||||    
T  48705418 cagatgattacttggttgtttcaatgtccgttgatcca 48705381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 401 - 672
Target Start/End: Complemental strand, 45371961 - 45371696
Alignment:
Q  401 aatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgc 500  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||  |||||||  ||| ||||||||||||||| | ||| |||||||  ||  |||||    
T  45371961 aatggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaacttttagagatgtctttgc 45371862  T
Q  501 cagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaat 600  Q
    | |||| |||||||| ||  |||||  |||||| ||| |||||||| ||| ||||||| |||||  ||| |  |       |  | |||| |||||||||    
T  45371861 ctgatggttttgaccctggtcctacatattgtgatttttgggtattcggaaaatttctcagtctttgggctaag------aaggaagatacagttgaaat 45371768  T
Q  601 atgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattcc 672  Q
    |||||| |||||||||||||||||  |||||||||||   |||||| |||||||| |||| |||||| ||||    
T  45371767 atgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatggcgttcc 45371696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 445 - 666
Target Start/End: Complemental strand, 45384747 - 45384520
Alignment:
Q  445 ggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggta 544  Q
    ||||||||||  |||  |||||||||| ||||  ||| ||||  || || ||||||||||||| ||| ||| |||||||||| |||||||||||||||||    
T  45384747 ggatgttattattgctgttgatttaatcgaaatgaaacttttttatatgcatttgccagatgagtttaaccgtgaacctaccgattgtggtttgtgggta 45384648  T
Q  545 tttggagaatttcttagtctaagggttgtggattgtcataa---tgatat---agttgaaatatgggtgatgaaagaatacaaagttaattcgtcttggg 638  Q
    |||||||||||||| ||| |  | | | || ||| | ||||   | ||||   ||||||||||||||||||||||||||| |||||  |||||||||||     
T  45384647 tttggagaatttctcagtttttgagctatgcattatgataatattaatatttcagttgaaatatgggtgatgaaagaatataaagtgcattcgtcttgga 45384548  T
Q  639 aaaagactcttgttctttctattgatgg 666  Q
     |||||||| ||||||| || |||||||    
T  45384547 caaagactcgtgttcttccttttgatgg 45384520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 516 - 670
Target Start/End: Original strand, 48870843 - 48870997
Alignment:
Q  516 atgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaaga 615  Q
    |||| |||| ||| |||||||||||||||||||| |||||||| ||||||   | | |||||| | || || ||| | ||||||| ||||||||||| ||    
T  48870843 atgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatga 48870942  T
Q  616 atacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcatt 670  Q
    ||||||||| || |||||||||  ||||||||||||||||||| |||||| ||||    
T  48870943 atacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatt 48870997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 516 - 670
Target Start/End: Original strand, 48876147 - 48876301
Alignment:
Q  516 atgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaaga 615  Q
    |||| |||| ||| |||||||||||||||||||| |||||||| ||||||   | | |||||| | || || ||| | ||||||| ||||||||||| ||    
T  48876147 atgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatga 48876246  T
Q  616 atacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcatt 670  Q
    ||||||||| || |||||||||  ||||||||||||||||||| |||||| ||||    
T  48876247 atacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatt 48876301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 516 - 670
Target Start/End: Original strand, 48886529 - 48886683
Alignment:
Q  516 atgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaaga 615  Q
    |||| |||| ||| |||||||||||||||||||| |||||||| ||||||   | | |||||| | || || ||| | ||||||| ||||||||||| ||    
T  48886529 atgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatga 48886628  T
Q  616 atacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcatt 670  Q
    ||||||||| || |||||||||  ||||||||||||||||||| |||||| ||||    
T  48886629 atacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatt 48886683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 532 - 672
Target Start/End: Complemental strand, 7773587 - 7773447
Alignment:
Q  532 tggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcg 631  Q
    ||||||||||||||||||||||| ||||||| || ||| |  ||||  |  |||||||| |||||||||||||||||||||||||||||||||  |||||    
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 7773488  T
Q  632 tcttgggaaaagactcttgttctttctattgatggcattcc 672  Q
    ||||||   ||  |||||||||||||| |||| | ||||||    
T  7773487 tcttggattaaatctcttgttctttctgttgaagccattcc 7773447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 45385029 - 45384901
Alignment:
Q  126 tatggaatccatccattggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattggtttggatatgacgagtt 225  Q
    |||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||| || ||||||| ||| | ||||| |||||  |||     
T  45385029 tatggaatccattcattagagttcacaaagaaatacctttgtctccttttggttctaatttagatacagattatttctatggttttgggtatgatcagtc 45384930  T
Q  226 aacagatgattacttggtggttttaatgt 254  Q
    |||| ||||||| |||||||||| |||||    
T  45384929 aacaaatgattatttggtggtttcaatgt 45384901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 535 - 670
Target Start/End: Complemental strand, 48156188 - 48156053
Alignment:
Q  535 tttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtct 634  Q
    |||||||||||||||||||||||| ||| || ||| ||| |||||   |||||| | ||||||||||||||||||||| |||||||||||  |||| |||    
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttct 48156089  T
Q  635 tgggaaaagactcttgttctttctattgatggcatt 670  Q
    |||   || |||||||| ||| ||||||||||||||    
T  48156088 tggactaaaactcttgtccttcctattgatggcatt 48156053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 534 - 672
Target Start/End: Original strand, 7771696 - 7771834
Alignment:
Q  534 gtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtc 633  Q
    ||||||||||||||||||||||||| ||| || | | |  ||||| | ||||||||| | ||| |||||||||||||||||||||||||||  |||||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  634 ttgggaaaagactcttgttctttctattgatggcattcc 672  Q
     |||   || ||||||||||||||| |||||| ||||||    
T  7771796 atggactaaaactcttgttctttctgttgatgccattcc 7771834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 528 - 673
Target Start/End: Original strand, 48899035 - 48899180
Alignment:
Q  528 attgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaa 627  Q
    |||||||||||||||| |||||||| ||| | ||| || ||| ||   ||| |  |||||||| ||||||||||||||||||||||||||| ||||| ||    
T  48899035 attgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatataaagtaaa 48899134  T
Q  628 ttcgtcttgggaaaagactcttgttctttctattgatggcattccc 673  Q
     || ||||||  |  ||||||||||||| |||||||||||||||||    
T  48899135 atcctcttggacagtgactcttgttcttcctattgatggcattccc 48899180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 593 - 674
Target Start/End: Complemental strand, 49038579 - 49038498
Alignment:
Q  593 gttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattccct 674  Q
    ||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||| ||||||  |||||||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctattagtggcattccct 49038498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 48147876 - 48147756
Alignment:
Q  128 tggaatccatccattggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattggtttggatatgacgagttaa 227  Q
    |||||||||||||  |||| | ||||  ||||||||||| ||||||||||||||||| ||||||||   ||||  ||| | ||||| |||||| ||||||    
T  48147876 tggaatccatccaccggagctaacaagaaaatacctttgtctccttttggttccaatttagatgcagcatattactatggttttgggtatgaccagttaa 48147777  T
Q  228 cagatgattacttggtggttt 248  Q
    |||||||||||||||||||||    
T  48147776 cagatgattacttggtggttt 48147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 532 - 655
Target Start/End: Original strand, 7765941 - 7766064
Alignment:
Q  532 tggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcg 631  Q
    |||||||||||||| |||||||||||| ||| || |||||  ||||  |  |||||||| | |||||||||||||||||||||||||||||||  |||||    
T  7765941 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 7766040  T
Q  632 tcttgggaaaagactcttgttctt 655  Q
    || |||   ||||| |||||||||    
T  7766041 tcatggactaagacacttgttctt 7766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 37827173 - 37827106
Alignment:
Q  108 gttcttcaaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctcctttt 175  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||||    
T  37827173 gttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgtctcctttt 37827106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 386 - 489
Target Start/End: Complemental strand, 49044097 - 49043994
Alignment:
Q  386 gtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaagaaaatttt 485  Q
    ||||||| |||||| |||||||||||| | ||||||||||||| || |||| |||| ||| ||||||||| ||| ||||||||||| ||||| ||| |||    
T  49044097 gtagggtcgctctttaatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaacttt 49043998  T
Q  486 taga 489  Q
    ||||    
T  49043997 taga 49043994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 672
Target Start/End: Original strand, 7878732 - 7878822
Alignment:
Q  582 ataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattcc 672  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||| ||||||   || ||||||||||||||  |||||| ||||||    
T  7878732 ataatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttcggttgatgtcattcc 7878822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 7908663 - 7908741
Alignment:
Q  594 ttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattcc 672  Q
    |||||||||||||||||||||||||||||||  |||| |||||| | || ||||||||||||||| |||||| ||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccattcc 7908741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 7237500 - 7237415
Alignment:
Q  537 tgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaa 622  Q
    |||||||||||||||||||||| |||||| ||| |  ||||| | ||||||||| | ||| |||||||||||||||||||||||||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaa 7237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 500 - 652
Target Start/End: Complemental strand, 37826784 - 37826632
Alignment:
Q  500 ccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaa 599  Q
    |||||||||||| || |||| ||| |  ||| |||||||||||||||||||||||||||||||||| |||   |||   || ||||| ||| | || ||     
T  37826784 ccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaat 37826685  T
Q  600 tatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgtt 652  Q
    || |||||||||||||||||||| |  |||||||||||   ||||||||||||    
T  37826684 tacgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 655
Target Start/End: Original strand, 7786763 - 7786886
Alignment:
Q  532 tggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcg 631  Q
    |||||||||||||| ||| |||||||| ||| || |||||  ||||  |  |||||||| | |||||||||||||||||||||||||||| ||  |||      
T  7786763 tggtttgtgggtatctggggaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaacgtgcattta 7786862  T
Q  632 tcttgggaaaagactcttgttctt 655  Q
    |||||| | |||||||||||||||    
T  7786863 tcttggaataagactcttgttctt 7786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 593 - 664
Target Start/End: Original strand, 48864395 - 48864466
Alignment:
Q  593 gttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgat 664  Q
    ||||||||||||||||||||||||||||||||  |||||||||||   |||| |||||||||| ||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgat 48864466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 594 - 664
Target Start/End: Original strand, 7813838 - 7813908
Alignment:
Q  594 ttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgat 664  Q
    |||||||||||||| ||||||||||||||||  ||||||||||| | || ||||||||||||||| |||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 7813908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 401 - 507
Target Start/End: Complemental strand, 48705275 - 48705169
Alignment:
Q  401 aatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgc 500  Q
    |||||||||||| |||||||||||| |||||||||| ||   | ||||||||||| ||| |||||||||||||||||  || |||| ||| ||  |||||    
T  48705275 aatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttttgatatgcttttgc 48705176  T
Q  501 cagatga 507  Q
    |||||||    
T  48705175 cagatga 48705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 637
Target Start/End: Original strand, 48903119 - 48903359
Alignment:
Q  394 gctcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtg 493  Q
    |||||| |||||||||||| ||| ||||||||||| ||||||| ||   | | ||||||||| ||| |||||||||||| ||| | |  |||| ||  |     
T  48903119 gctctttaatggggctattcattagttggcttttcatcatgatttaagaaagaatgttattgttgcctttgatttaatgaaaaaagacctttttgagatt 48903218  T
Q  494 aatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatag 593  Q
      | | |||  |||| | ||| ||||| |||| || |||| ||| ||||||||||||||||||||||| ||| ||| | ||||||   ||||| |   |     
T  48903219 cctctcccacttgatgtggactatgaatctacaaagtgtgatttatgggtatttggagaatttcttagcctatgggctttggattacgataataa---at 48903315  T
Q  594 ttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgg 637  Q
    |||||||||||||||||||||||||||||||  ||| |||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttgg 48903359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 585 - 673
Target Start/End: Complemental strand, 49048264 - 49048176
Alignment:
Q  585 atgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattccc 673  Q
    ||||||||||||||||||||||||||||||| || |||||  ||||||| |||   |||||| ||||| |||||| ||||| |||||||    
T  49048264 atgatatagttgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcattccc 49048176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 48891313 - 48891372
Alignment:
Q  113 tcaaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctcct 172  Q
    |||||||||||  ||||||||||||||| |||| |||||||||||||||||||| |||||    
T  48891313 tcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctcct 48891372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 49044357 - 49044302
Alignment:
Q  126 tatggaatccatccattggagttcacaaacaaatacctttgcctccttttggttcc 181  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||    
T  49044357 tatggaatccatccactagagttcacaaacaaatacctttgtctccttatggttcc 49044302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 664
Target Start/End: Original strand, 7800998 - 7801068
Alignment:
Q  594 ttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgat 664  Q
    |||||||||||||| ||||||| ||||||||  ||||||||||| | || ||||||||||||||| |||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 7801068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 7773999 - 7773930
Alignment:
Q  114 caaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctccttttggttccaa 183  Q
    ||||||||||||||||||||||||||| |||| || | ||||||||||||  | |||||||| |||||||    
T  7773999 caaacatctacatatggaatccatccactggatttaaaaaacaaatacctgggtctccttttcgttccaa 7773930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 7877632 - 7877697
Alignment:
Q  118 catctacatatggaatccatccattggagttcacaaacaaatacctttgcctccttttggttccaa 183  Q
    ||||||||||||||||||||||| |||| || | |||||||||||| || |||||||| |||||||    
T  7877632 catctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctccttttcgttccaa 7877697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 48863128 - 48863189
Alignment:
Q  111 cttcaaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctcct 172  Q
    |||||||||||||| |||||||||||||||  |||| ||| ||||||||||||| |||||||    
T  48863128 cttcaaacatctacctatggaatccatccaccggagctcagaaacaaataccttcgcctcct 48863189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 49041046 - 49041002
Alignment:
Q  396 tcttcaatggggctatttattggttggcttttcgtcatgatatat 440  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  49041046 tcttcaacggggctattcattggttggcttttcgtcatgatatat 49041002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 396 - 439
Target Start/End: Original strand, 48863413 - 48863456
Alignment:
Q  396 tcttcaatggggctatttattggttggcttttcgtcatgatata 439  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||    
T  48863413 tcttcaacggggctattcattggttggcttttcgtcatgatata 48863456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 405 - 508
Target Start/End: Complemental strand, 49048464 - 49048361
Alignment:
Q  405 gggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccaga 504  Q
    |||||||| | ||||||||||||| || |||| |||| ||| ||||||||| ||| |||||||||| |||||||||  || ||||| ||  | |||||||    
T  49048464 gggctattcactggttggcttttcatcttgatttatcgatgaatgttattgttgcctttgatttaacggaaagaaaccttgtagatatgtctctgccaga 49048365  T
Q  505 tgat 508  Q
    ||||    
T  49048364 tgat 49048361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 48870366 - 48870496
Alignment:
Q  36 attttttgcttccccaatctgagtataatcttgaaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaaacatctacatatggaatcc 135  Q
    ||||| |||||||  ||||| | ||| || ||||||||||||| ||||||| ||| |||||  | ||   |||| || ||| | ||||| ||||||||||    
T  48870366 attttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatcc 48870465  T
Q  136 atccattggagttcacaaacaaatacctttg 166  Q
    |||||  ||| ||||||||||||||||||||    
T  48870466 atccaccggatttcacaaacaaatacctttg 48870496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 48886052 - 48886182
Alignment:
Q  36 attttttgcttccccaatctgagtataatcttgaaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaaacatctacatatggaatcc 135  Q
    ||||| |||||||  ||||| | ||| || ||||||||||||| ||||||| ||| |||||  | ||   |||| || ||| | ||||| ||||||||||    
T  48886052 attttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatcc 48886151  T
Q  136 atccattggagttcacaaacaaatacctttg 166  Q
    |||||  ||| ||||||||||||||||||||    
T  48886152 atccaccggatttcacaaacaaatacctttg 48886182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 564
Target Start/End: Original strand, 50669244 - 50669416
Alignment:
Q  395 ctcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtg- 493  Q
    ||||| |||| ||||||||||||||||||||||||| ||||| ||    ||  ||| |||| ||| |||||||| |||||||| ||| | |||||  ||     
T  50669244 ctctttaatgaggctatttattggttggcttttcgttatgatttaaaggtgtttgtcattgttgcctttgatttgatggaaaggaaactgttagacatgc 50669343  T
Q  494 --aatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtct 564  Q
      | | | || |||||||||  |||| || || |  ||||||||||||||||||||||||||||||| |||||    
T  50669344 ctactcttccggatgattttatccatcaaacttcagattgtggtttgtgggtatttggagaatttctcagtct 50669416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 7237893 - 7237824
Alignment:
Q  114 caaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctccttttggttccaa 183  Q
    ||||||||||| ||||||||||||||| |||| || | |||||||||||  || ||||||||| ||||||    
T  7237893 caaacatctacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctccttttgattccaa 7237824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 48852577 - 48852622
Alignment:
Q  126 tatggaatccatccattggagttcacaaacaaatacctttgcctcc 171  Q
    |||||||||||||||  |||||||||||||||||||||||| ||||    
T  48852577 tatggaatccatccaccggagttcacaaacaaatacctttgtctcc 48852622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 48875740 - 48875809
Alignment:
Q  106 ttgttcttcaaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctcctttt 175  Q
    ||||| ||||| | ||||| |||||||||||||||  ||| ||||||||||||||||| || ||||||||    
T  48875740 ttgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacctatgtctcctttt 48875809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 50251011 - 50250894
Alignment:
Q  66 ttgaaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaaacatctacatatggaatccatccattggagttcacaaacaaataccttt 165  Q
    ||||||||||||| ||||||| ||| |||||  ||||    |||| ||||| | ||||| |||||||||||||||  ||  |||||| ||||||||||||    
T  50251011 ttgaaattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaataccttt 50250912  T
Q  166 gcctccttttggttccaa 183  Q
    | ||| ||||| ||||||    
T  50250911 gtctcattttgattccaa 50250894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 45366371 - 45366323
Alignment:
Q  128 tggaatccatccattggagttcacaaacaaatacctttgcctccttttg 176  Q
    ||||||||||||| |||| |||| ||| |||||||||||||||||||||    
T  45366371 tggaatccatccactggatttcataaaaaaatacctttgcctccttttg 45366323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 50668869 - 50669016
Alignment:
Q  29 aaccttaattttttgcttccccaatctgagtataatcttgaaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaaacatctacatat 128  Q
    |||||||||||||  ||||| |||||| | | || || ||| |||| ||| || |||| ||| |||||  ||||   ||||||||| ||||||| |||||    
T  50668869 aaccttaatttttcacttcctcaatcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatat 50668968  T
Q  129 ggaatccatccattggagttcacaaacaaatacctttgcctccttttg 176  Q
    ||||||||||||   || |||| ||||| ||||| ||| |||||||||    
T  50668969 ggaatccatccaccagatttcataaacagataccattgtctccttttg 50669016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 50672412 - 50672451
Alignment:
Q  126 tatggaatccatccattggagttcacaaacaaataccttt 165  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaataccttt 50672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 565
Target Start/End: Complemental strand, 43596216 - 43596154
Alignment:
Q  503 gatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtcta 565  Q
    |||| ||||||| |||| ||||  ||||||| | ||||||||||||| |||||||||||||||    
T  43596216 gatggttttgactatgatcctaaaaattgtgatatgtgggtatttggggaatttcttagtcta 43596154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 48898633 - 48898679
Alignment:
Q  126 tatggaatccatccattggagttcacaaacaaatacctttgcctcct 172  Q
    |||||||||||||||  |||| ||||||||||||||||||| |||||    
T  48898633 tatggaatccatccaccggagctcacaaacaaatacctttgtctcct 48898679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 50250485 - 50250403
Alignment:
Q  535 tttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaat 617  Q
    ||||||||||||||||||| |||| ||||||  || ||  |||| ||| |||| || |  |||||||||||||||||||||||    
T  50250485 tttgtgggtatttggagaaattctcagtctattgggtggtgattttcagaatggtacaactgaaatatgggtgatgaaagaat 50250403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 7878045 - 7878078
Alignment:
Q  532 tggtttgtgggtatttggagaatttcttagtcta 565  Q
    ||||||||||||||||||||||||||| ||||||    
T  7878045 tggtttgtgggtatttggagaatttctcagtcta 7878078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 49048743 - 49048698
Alignment:
Q  128 tggaatccatccattggagttcacaaacaaatacctttgcctcctt 173  Q
    ||||||||||||| | ||||||||| ||||||||||||| ||||||    
T  49048743 tggaatccatccactagagttcacagacaaatacctttgtctcctt 49048698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 50250670 - 50250629
Alignment:
Q  395 ctcttcaatggggctatttattggttggcttttcgtcatgat 436  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  50250670 ctctttaatggggctattcattggttggcttttcgttatgat 50250629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 344 - 673
Target Start/End: Original strand, 21015938 - 21016261
Alignment:
Q  344 ggtactcacttcccttatatgaattcatgtgatgatcctagagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatcca 443  Q
    ||||||| ||||||||| |||||| | | |||| || | |  ||||||| | | || |||||||||||| ||||||||||||||||||||||| |||| |    
T  21015938 ggtactcccttcccttacatgaatacctctgattattccatggtagggtcggtttttaatggggctattcattggttggcttttcgtcatgatttatcaa 21016037  T
Q  444 tggatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggt 543  Q
    || | |||||   ||| |||||||| || ||||||||| |||| ||  ||  |||||| |||||| | || ||||||||||   |||||| |||||||||    
T  21016038 tgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggt 21016137  T
Q  544 atttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaag 643  Q
    ||| || |||||| | ||| || ||  | |||      ||| ||||||||||||||||||||| |||||||||||||||||  |||||||||||   |||    
T  21016138 attcggtgaatttttgagtgtatggactatgg------atagtgatatagttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaag 21016231  T
Q  644 actcttgttctttctattgatggcattccc 673  Q
    ||||||  | | |||||||||| |||||||    
T  21016232 actcttactttctctattgatgacattccc 21016261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 21015706 - 21015766
Alignment:
Q  112 ttcaaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctcct 172  Q
    ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||    
T  21015706 ttcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 21015766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 475
Target Start/End: Complemental strand, 14197558 - 14197479
Alignment:
Q  396 tcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaa 475  Q
    |||| |||||| ||||| |||||| ||||  ||||| |||| |||  ||||||||||||  |||||||||||||||||||    
T  14197558 tctttaatgggtctattcattggtcggctcgtcgtcctgatctatttatggatgttattattgcatttgatttaatggaa 14197479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 516 - 670
Target Start/End: Original strand, 9120046 - 9120200
Alignment:
Q  516 atgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaaga 615  Q
    ||||| |||| ||||||| | |||||||||||||||||||||| ||| || ||| | |||||| |  |||||||| ||||||||||||||||||||||||    
T  9120046 atgaagctacaaattgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaaga 9120145  T
Q  616 atacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcatt 670  Q
    |||||||||  |||| |||||| | || ||||||||| | |||||||| ||||||    
T  9120146 atacaaagtgcattcctcttggaagaaaactcttgttttgtctattgacggcatt 9120200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 505 - 638
Target Start/End: Original strand, 179330 - 179463
Alignment:
Q  505 tgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgg 604  Q
    |||| ||||| ||||| |||| ||||||| | | |||||||||||| ||||||| ||| || ||| | |||||| | ||||||||| |||||||||||||    
T  179330 tgatattgactatgaagctacaaattgtgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgg 179429  T
Q  605 gtgatgaaagaatacaaagttaattcgtcttggg 638  Q
    ||||||||||||||||||||  |||| |||||||    
T  179430 gtgatgaaagaatacaaagtgcattcatcttggg 179463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 29696125 - 29696261
Alignment:
Q  125 atatggaatccatccattggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattggtttggatatgacgagt 224  Q
    ||||||||||||||||  ||| ||||||||| |||||||||  || |  ||| |||||||  ||||||||||||||| ||| | ||||| ||||||||||    
T  29696125 atatggaatccatccaccggatttcacaaacgaataccttttactacaattgattccaatccagatgcaaattatttctatggttttgggtatgacgagt 29696224  T
Q  225 taacagatgattacttggtggttttaatgtccgatga 261  Q
     ||||||||||||||||||| ||| ||||||| ||||    
T  29696225 caacagatgattacttggtgatttcaatgtcctatga 29696261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 582 - 686
Target Start/End: Original strand, 29688478 - 29688582
Alignment:
Q  582 ataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctattgatggcattccctctcatta 681  Q
    |||||| || |||||||||||||||||||||| ||||||| ||  | |||||||||  ||||||||| ||||||||| ||| || |||||||  ||| ||    
T  29688478 ataatggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcacta 29688577  T
Q  682 ctttt 686  Q
    |||||    
T  29688578 ctttt 29688582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 477
Target Start/End: Original strand, 29696401 - 29696477
Alignment:
Q  401 aatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaag 477  Q
    |||||||||||| | ||||||||||||||| |||||||||| |||  |||||||| ||| ||| ||||||| |||||    
T  29696401 aatggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaag 29696477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 661
Target Start/End: Complemental strand, 42562034 - 42561966
Alignment:
Q  593 gttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctttctatt 661  Q
    ||||| ||||||||||||||||||||||||||  |||| ||||||   |||| |||||||||| |||||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttcttcctatt 42561966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 42562225 - 42562181
Alignment:
Q  396 tcttcaatggggctatttattggttggcttttcgtcatgatatat 440  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||    
T  42562225 tcttcaatggggctattcactggttggctcttcgtcatgatatat 42562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 42562498 - 42562446
Alignment:
Q  120 tctacatatggaatccatccattggagttcacaaacaaatacctttgcctcct 172  Q
    ||||| |||||||||||||||| |||  ||||||||||||||||||| |||||    
T  42562498 tctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcct 42562446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 528 - 665
Target Start/End: Original strand, 15349178 - 15349315
Alignment:
Q  528 attgtggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaa 627  Q
    |||||||||||||||| ||||| |||||| |||||||  ||  |  ||||| || ||||||||   ||||||||||||||||||||||||||||||| ||    
T  15349178 attgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaa 15349277  T
Q  628 ttcgtcttgggaaaagactcttgttctttctattgatg 665  Q
     || ||||||  ||||| ||||||||||  ||||||||    
T  15349278 ctcttcttggacaaagattcttgttcttaatattgatg 15349315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 353 - 487
Target Start/End: Complemental strand, 4031844 - 4031710
Alignment:
Q  353 ttcccttatatgaattcatgtgatgatcctagagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgtta 452  Q
    ||||||||||| ||| | | | ||||||| |||||||||| ||| || | |||  ||||| ||||||||||||||||||||||| |||| ||  ||||||    
T  4031844 ttcccttatataaatgcctctcatgatcccagagtagggtcgctttttagtggatctattcattggttggcttttcgtcatgatttatcgataaatgtta 4031745  T
Q  453 ttgctgcatttgatttaatggaaagaaaattttta 487  Q
    | | ||| |||||||||| |||||||||| |||||    
T  4031744 tcgttgcctttgatttaacggaaagaaaactttta 4031710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 622
Target Start/End: Complemental strand, 4962281 - 4962191
Alignment:
Q  532 tggtttgtgggtatttggagaatttcttagtctaagggttgtggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaa 622  Q
    ||||||||||||||||||||||||||| |||||| |||   |||||| ||  |||  || |||||||||||||||||||||||||||||||    
T  4962281 tggtttgtgggtatttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaa 4962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 264
Target Start/End: Original strand, 15348716 - 15348914
Alignment:
Q  66 ttgaaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaaacatctacatatggaatccatccattggagttcacaaacaaataccttt 165  Q
    ||||||||||||| ||||||| ||| ||| | ||||| |  | || ||||| | ||||  |||||||||||||||  ||| |||||| | || |||||||    
T  15348716 ttgaaattaaaggttcatgtagaggctttgtacttttgaactattattcaatcctctatctatggaatccatccaccggatttcacagaaaagtaccttt 15348815  T
Q  166 gcctccttttggttccaatgtagatgcaaattatttttattggtttggatatgacgagttaacagatgattacttggtggttttaatgtccgatgatcc 264  Q
    | | ||| ||||||  ||  |||| ||  | ||||| ||| | || || |||||| | |||| |||||||||||||||||||||||||||| |||||||    
T  15348816 gtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcc 15348914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 4032071 - 4032032
Alignment:
Q  126 tatggaatccatccattggagttcacaaacaaataccttt 165  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  4032071 tatggaattcatccattggagttcacaaacaaataccttt 4032032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 12200641 - 12200674
Alignment:
Q  532 tggtttgtgggtatttggagaatttcttagtcta 565  Q
    ||||||||||||||||||||||||||||||||||    
T  12200641 tggtttgtgggtatttggagaatttcttagtcta 12200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 12445069 - 12445102
Alignment:
Q  532 tggtttgtgggtatttggagaatttcttagtcta 565  Q
    ||||||||||||||||||||||||||||||||||    
T  12445069 tggtttgtgggtatttggagaatttcttagtcta 12445102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 4031631 - 4031583
Alignment:
Q  589 tatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgg 637  Q
    |||||||||||||||||| ||||||||||||||| |  |||||||||||    
T  4031631 tatagttgaaatatgggttatgaaagaatacaaaatgcattcgtcttgg 4031583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 12195303 - 12195360
Alignment:
Q  209 tttggatatgacgagttaacagatgattacttggtggttttaatgtccgatgatccaa 266  Q
    ||||| |||||||  |||| ||||||||||||||| |||||| ||||| |||||||||    
T  12195303 tttggttatgacggattaagagatgattacttggtcgttttattgtcctatgatccaa 12195360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 12439731 - 12439788
Alignment:
Q  209 tttggatatgacgagttaacagatgattacttggtggttttaatgtccgatgatccaa 266  Q
    ||||| |||||||  |||| ||||||||||||||| |||||| ||||| |||||||||    
T  12439731 tttggttatgacggattaagagatgattacttggtcgttttattgtcctatgatccaa 12439788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 48883655 - 48883761
Alignment:
Q  69 aaattaaagggtcatgtaaagggtttatgcttttaagttgttcttcaaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcc 168  Q
    |||||||||| || |||| ||||||| || ||||   | ||||||| ||||||| |||||||||||||| || |||| |||||||||||||||||||| |    
T  48883655 aaattaaaggttcgtgtagagggtttctgtttttgcatggttcttccaacatctgcatatggaatccatacactggatttcacaaacaaatacctttgtc 48883754  T
Q  169 tcctttt 175  Q
    |||||||    
T  48883755 tcctttt 48883761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 655
Target Start/End: Original strand, 48884176 - 48884246
Alignment:
Q  585 atgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctt 655  Q
    |||||| ||||||||||| |||||||||||||||||||||  ||  |||||||   |||||||||||||||    
T  48884176 atgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 24310078 - 24310143
Alignment:
Q  107 tgttcttcaaacatctacatatggaatccatccattggagttcacaaacaaatacctttgcctcct 172  Q
    |||| ||||||||| ||| |||||||||||||||  |||||||| | ||||||||||| |||||||    
T  24310078 tgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcct 24310143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 24310370 - 24310451
Alignment:
Q  396 tcttcaatggggctatttattggttggcttttcgtcatgatatatccatggatgttattgctgcatttgatttaatggaaag 477  Q
    ||||||||||||||||| | ||||||||| ||||||||||| ||| |  | ||||||||| | | ||| ||||||| |||||    
T  24310370 tcttcaatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaag 24310451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 624
Target Start/End: Original strand, 24310570 - 24310607
Alignment:
Q  587 gatatagttgaaatatgggtgatgaaagaatacaaagt 624  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  24310570 gataaagttgatatatgggtgatgaaagaatacaaagt 24310607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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