View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13730_low_1 (Length: 391)
Name: NF13730_low_1
Description: NF13730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13730_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 42118284 - 42118659
Alignment:
| Q |
1 |
taacatgcaaaaattgtaaatatgtaaattcttgaagccttttgtcaatagacgccatccttgtttaaccaaacggaactcatctttgttttttcaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42118284 |
taacatgcaaaaattgtaaatatgtaaattcttgaagccttttgtcaatagacgccatccttgtttaaccaaacggaactcatcattgttttttcaatct |
42118383 |
T |
|
| Q |
101 |
cgtccccgaaagagggtgtgc--agaaaaatgctcattacataagccacaatatattgaaggacggatttttaatcataacttccttactaccacgtgaa |
198 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42118384 |
cgtccccgaaagagggtgtgagaagaaaaatgctcattacataagccacaatatattgaaggacggatttttaatcataacttccttactaccacgtgaa |
42118483 |
T |
|
| Q |
199 |
aggttcttgataataataagtgagtaataaaagtggcatacctacaaatattgactccatgaaggtcaccctttctgtttgcttgcttaatctatatgct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42118484 |
aggttcttgataataataagtgagtaatgaaagtggcatacctacaaatattgactccatgaaggtcaccctttctgttagcttgcttaatctatatgct |
42118583 |
T |
|
| Q |
299 |
aataaaccttctagacatataatggatgaatatggtgataaaggatcactttgtcgcaggcctcaaccaaggatat |
374 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42118584 |
aataaaccttctacacatacaatgaatgaatatggtgataaaggatcactttgtcgcaggcctcaaccaaggatat |
42118659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 42118255 - 42118283
Alignment:
| Q |
41 |
tttgtcaatagacgccatccttgtttaac |
69 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42118255 |
tttgtcaatagacgccatccttgtttaac |
42118283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University