View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13730_low_2 (Length: 379)
Name: NF13730_low_2
Description: NF13730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13730_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 18339626 - 18339978
Alignment:
| Q |
9 |
gacatcatcagctatatccatcaacggcgcaagacactctggcgagaatttcctcgcaaatagatatgaataacttgaattcgacaccctcagctgtcga |
108 |
Q |
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| T |
18339626 |
gacatcatcggctatatccatcagcggagcaagacactccggcgagaatttcctcgcaaatagatatgaataactcgaattcgacaccctcagctgtcga |
18339725 |
T |
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| Q |
109 |
attagctccggggaaacctcctccggagtataaagatgaggatgtccatcccaacaaccagtccaattaactctcgtcagtgtaaaaccagtacacccat |
208 |
Q |
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| T |
18339726 |
attagctccggggaaacctcctccggagtataaagatgaggatgtccatcccaacaaccagtccaattaactctcgtcagtgtaaaaccagtacacccat |
18339825 |
T |
|
| Q |
209 |
tcagatcctccatagacaaaagagtgggaaaataatgctcttctggataacaagaatccaaatttacacaaggaatccgaaacttcttccatagcttata |
308 |
Q |
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| T |
18339826 |
tcagatcctccatagacaaaagagtgggaaaataatgctcttctggataacaagaatccaaatttacacaaggaatccgaaacttcttccatagcttata |
18339925 |
T |
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| Q |
309 |
atctctcaccacaacctttgcatgcttcctattcaagataaaaaactgcgaac |
361 |
Q |
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| T |
18339926 |
atctctcaccacaacctttgcatgcttcctattcaagataaaaaactgcgaac |
18339978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 18344784 - 18345128
Alignment:
| Q |
9 |
gacatcatcagctatatccatcaacggcgcaagacactctggcgagaatttcctcgcaaatagatatgaataacttgaattcgacaccctcagctgtcga |
108 |
Q |
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| T |
18344784 |
gacatcatcggcaatattcatcaacggagcaagacattccggcgagaatttcctagcgaatagatatgaataactccaattggagaccctcagctgacga |
18344883 |
T |
|
| Q |
109 |
attagctccggggaaacctcctccggagtataaagatgaggatgtccatcccaacaaccagtccaattaactctcgtcagtgtaaaaccagtacacccat |
208 |
Q |
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| T |
18344884 |
aaaagctccggcgacacctctgctggagtataaagatgtggatgaccatagacagcaccggtccaattaactctagtcagtgtaaaaccagtacacccct |
18344983 |
T |
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| Q |
209 |
tcagatcctccatagacaaaagagtgggaaaataatgctcttctggataacaagaatccaaatttacacaaggaatccgaaacttcttccatagcttata |
308 |
Q |
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||| ||||||||| || | |||||| | |||||||||||| |||||||||||| ||| | |||| ||| |||||| ||||||| ||||||||||| | |
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| T |
18344984 |
tcaaatcctccattgatagaagagtcgaaaaataatgctcctctggataacaataatacttatttgtacatggaatctgaaacttgttccatagcttttg |
18345083 |
T |
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| Q |
309 |
atctctcaccacaacctttgcatgcttcctattcaagataaaaaa |
353 |
Q |
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| T |
18345084 |
atctctcaacacaacctttgtatgtttccggttcaagataaaaaa |
18345128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 18304070 - 18303720
Alignment:
| Q |
9 |
gacatcatcagctatatccatcaacggcgcaagacactctggcgagaatttcctcgcaaatagatatgaataacttgaattcgacaccctcagctgtcga |
108 |
Q |
| |
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|||||||| |||||||||||||||||| || ||| || || ||||||||||| ||||| ||||| | ||||| |||||||| ||| ||||| || |
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| T |
18304070 |
gacatcataagctatatccatcaacggtgctagagtttccggtgagaatttccttgcaaacagataggggtaactggaattcgatttcctaagctggcgt |
18303971 |
T |
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| Q |
109 |
attagctccggggaaacctcctccggagtataaagatgaggatgtccatcccaacaaccagtccaattaactctcgtcagtgtaaaaccagtacacccat |
208 |
Q |
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| T |
18303970 |
acaagctccggcgacacctcctctcgagtataaagatgcggatgtccgtcagtacaaccagtccagttaactctcgtaagagtaaaacccgtgcagccat |
18303871 |
T |
|
| Q |
209 |
tcagatcctccatagacaaaagagtgggaaaataatgctcttctggataacaagaatccaaatttacacaaggaatccgaaacttcttccatagcttata |
308 |
Q |
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| |||||||| || | |||||| ||||| ||||||||||| || ||||| |||| | || || ||| |||||||||||||||||||| | ||| | |
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| T |
18303870 |
cgcgctcctccatcgatagaagagtcggaaagtaatgctcttccgggtaacaggaatacgtatctatacatggaatccgaaacttcttccacaacttttg |
18303771 |
T |
|
| Q |
309 |
atctctcaccacaacctttgcatgcttcctattcaagataaaaaactgcga |
359 |
Q |
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||||| || |||||||||||||| |||| |||| |||||| || ||||| |
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| T |
18303770 |
atctcgcagaacaacctttgcatgtttccggttcaggataaagaattgcga |
18303720 |
T |
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