View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13730_low_3 (Length: 292)
Name: NF13730_low_3
Description: NF13730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13730_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 83 - 274
Target Start/End: Original strand, 34535303 - 34535494
Alignment:
| Q |
83 |
taaaagtggttagattcttatattgaaactaacttagaaagtaagaagagtcggctttaacatacttaatttagatcttatctttattttatgtgggaat |
182 |
Q |
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| T |
34535303 |
taaaagtggttagattcttatattgaaactaacttataaagtaagaagagtcacttttaacatacttattttagatcttatctttattttacgtgggaat |
34535402 |
T |
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| Q |
183 |
tgagttttcctaatatatattaagtttggtgcatgaatataatattcgatcaaatttttaaaaatgacttataaagttaaaagagtcatttt |
274 |
Q |
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| T |
34535403 |
tgagttttcctaatatatattaagtttggtgcatgaatataatattcgatcaaatttttaaaaatgacttataaagttaaaagagtcatttt |
34535494 |
T |
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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 34534900 - 34534977
Alignment:
| Q |
11 |
cagagacacacattaacaagatcctaacctttttagtgggttacataaaattttcttaacatattaattatataaaag |
88 |
Q |
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| T |
34534900 |
cagagacacacgttaacaagatcctaacctttttagtgggttacataaatttttcttaacatattaattatctaaaag |
34534977 |
T |
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