View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13731_high_10 (Length: 287)
Name: NF13731_high_10
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13731_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 18628877 - 18628614
Alignment:
| Q |
8 |
gagcagagacagcagtgtcgacgaagtgatgcaggtaatagacacaaaagatttatagaagagacaaaacctttgaacattcatcaataacttccacgtc |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18628877 |
gagccgagacagcagtgtcgacgaagtgatgcaggtaatagacacaaaaactttatagaagagacaaaacctttgaacattcatcaataacttccacgtc |
18628778 |
T |
|
| Q |
108 |
aagttaccaaaaatattgaaaagaatttgcattctttcgctttatgaaataatatattttcacatgagtcataataataatttaaataagttaaatcatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18628777 |
aagttaccaaaaatattgaaaagaatttgcattctttcgctttatgaaataatatattttcacatgagtcataataataatttaaataagttaaatcatt |
18628678 |
T |
|
| Q |
208 |
gttacaggtgcgcgtgccgataagtagagcttcatctgcatcagagagagttgggagaaggaac |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18628677 |
gttacaggtgcgcgtgccgataagtagagcttcatctgcatcagagagagttgggagaaggaac |
18628614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University