View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13731_high_9 (Length: 310)
Name: NF13731_high_9
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13731_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 35202593 - 35202726
Alignment:
| Q |
164 |
ccatagttttgatattgcttctacctcaaaccatatcaattctcttctttatggtaactcttcttgtcatgatgtgatgaactttccttttgcaacaagg |
263 |
Q |
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| T |
35202593 |
ccatagttttgatattgcttctacctcaaaccatatcaattctcttctttatggtaactcttcttgtcatgatgtgatgaactttccttttgcaacaagg |
35202692 |
T |
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| Q |
264 |
ttcaattctacaagagtttcaagttcttcttctg |
297 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35202693 |
ttcaattctacaagagtttcaagttcttcttctg |
35202726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 35202449 - 35202572
Alignment:
| Q |
14 |
tggtggtggttgcagaaaaaacaaacgtcttaaacgaccaaatcactcctcttcaaatattgatactgctactgcttctccttcttcttcaactcctact |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35202449 |
tggtggtggttgcagaaaaaacaaacgtcttaaacgaccaaatcactcttcttcaaatattgatactgctactgcttctccttcttcttcaactcctaat |
35202548 |
T |
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| Q |
114 |
agtgctaattcaaaccctccttct |
137 |
Q |
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|||||||||||||||||||||||| |
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| T |
35202549 |
agtgctaattcaaaccctccttct |
35202572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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