View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13731_low_1 (Length: 798)
Name: NF13731_low_1
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13731_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 19 - 783
Target Start/End: Original strand, 11592414 - 11593178
Alignment:
| Q |
19 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592414 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11592513 |
T |
|
| Q |
119 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11592514 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactc |
11592613 |
T |
|
| Q |
219 |
tctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttcccttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
11592614 |
tctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgccttt |
11592713 |
T |
|
| Q |
319 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11592714 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
11592813 |
T |
|
| Q |
419 |
ttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattacatgtt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
11592814 |
ttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcctttgctttctccatcacatgtt |
11592913 |
T |
|
| Q |
519 |
tgcatttaccatatgcatcacaaataagctctttagcatctctagcattaggagtatgaagattataatgtgatgaagatgcatcatgtgaaattccttg |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11592914 |
tgcatttaccatatgcatcacaaataagctctttagcatttttggcattaggagtatgaagattataatgtgatgaagatgcatcttgtgaaattccttg |
11593013 |
T |
|
| Q |
619 |
acccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaaccagaatccatgttggtgtaatcttgttgatgggtttgt |
718 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11593014 |
acccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttggtgtaatcttgttgatgggtttgt |
11593113 |
T |
|
| Q |
719 |
tgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaacaac |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11593114 |
tgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaacaac |
11593178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 19 - 783
Target Start/End: Complemental strand, 11645705 - 11644941
Alignment:
| Q |
19 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11645705 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11645606 |
T |
|
| Q |
119 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11645605 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactc |
11645506 |
T |
|
| Q |
219 |
tctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttcccttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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|
| T |
11645505 |
tctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgccttt |
11645406 |
T |
|
| Q |
319 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11645405 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
11645306 |
T |
|
| Q |
419 |
ttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattacatgtt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
11645305 |
ttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcctttgctttctccatcacatgtt |
11645206 |
T |
|
| Q |
519 |
tgcatttaccatatgcatcacaaataagctctttagcatctctagcattaggagtatgaagattataatgtgatgaagatgcatcatgtgaaattccttg |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11645205 |
tgcatttaccatatgcatcacaaataagctctttagcatttttggcattaggagtatgaagattataatgtgatgaagatgcatcttgtgaaattccttg |
11645106 |
T |
|
| Q |
619 |
acccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaaccagaatccatgttggtgtaatcttgttgatgggtttgt |
718 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645105 |
acccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttggtgtaatcttgttgatgggtttgt |
11645006 |
T |
|
| Q |
719 |
tgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaacaac |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645005 |
tgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaacaac |
11644941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 161 - 552
Target Start/End: Complemental strand, 37181056 - 37180666
Alignment:
| Q |
161 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
259 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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|
| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
|
| Q |
260 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataa |
358 |
Q |
| |
|
| ||||||||||| | ||||||||||||| || ||||||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataa |
37180860 |
T |
|
| Q |
359 |
acatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaa |
458 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
37180859 |
acatcattagctttatcataaactttctctttaacattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgcataaacaa |
37180760 |
T |
|
| Q |
459 |
tatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattacatgtttgcatttaccatatgcatcacaaataagctcttt |
552 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37180759 |
tatctctcttcttatcaattgtttatgaggctttatcctttgctttctccattgcgtgtttgcatttaccatatgcatcacaaataagctcttt |
37180666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 595 - 714
Target Start/End: Complemental strand, 31069361 - 31069243
Alignment:
| Q |
595 |
agatgcatcatgtgaaattccttgacccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaaccagaatccatgttg |
694 |
Q |
| |
|
||||| ||| ||||| ||||||||||| || ||||| ||||| |||||| |||||| ||| | |||| ||||||||||||||||| ||||| || ||| |
|
|
| T |
31069361 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
31069263 |
T |
|
| Q |
695 |
gtgtaatcttgttgatgggt |
714 |
Q |
| |
|
||| |||| | ||||||||| |
|
|
| T |
31069262 |
gtgaaatcatcttgatgggt |
31069243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 781
Target Start/End: Complemental strand, 39126987 - 39126935
Alignment:
| Q |
728 |
ggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaaca |
781 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||| || |||||||||||| |
|
|
| T |
39126987 |
ggtaagattgagattt-ggtgctttggtaactatcttggtcgtattcaacaaca |
39126935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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