View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13731_low_11 (Length: 317)
Name: NF13731_low_11
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13731_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 16784807 - 16784548
Alignment:
| Q |
18 |
agtaaaaacattccttgtgacagatgccacgtgttactcaaaattctcaactaaaattttccaagtttctttcaaatcagaagaagcacttaagtcatga |
117 |
Q |
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| T |
16784807 |
agtaaaaacatcccttgtgacagatgccacgtgttactcaaaattctcaactaaaattttccaagtttctttcaaatcagaagaagcacttaagtcatga |
16784708 |
T |
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| Q |
118 |
ccgacctcaacaagcctgtcaagagcccacgtaccatctaggcatctacaacccagctctataaatataatatcctttggatttgagtaatcattatgtc |
217 |
Q |
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| T |
16784707 |
ccgacctcaacaagcctgtcaagagcccacgtaccatctaggcatctacaacccagctctataaatataatatcctttggatttgagtaatcattatgtc |
16784608 |
T |
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| Q |
218 |
tgaaatactctcaaccaatcccaagccaccattcaattttcaagatgtgtatcattttca |
277 |
Q |
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| T |
16784607 |
tgaaatactctcaaccaatcccaagccaccattcaattttcaagatgtgtatcattttca |
16784548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 12637118 - 12637209
Alignment:
| Q |
183 |
tataatatcctttggatttgagtaatcattatgtctgaaatactctcaaccaatcccaagccaccattcaattttcaagatgtgtatcatttt |
275 |
Q |
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| T |
12637118 |
tataatatcctttggatt-gagtaatcattaagtcataaatgcacacaaccaatccaaagccaccattgaattttccagatgtgcatcatttt |
12637209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 12637006 - 12637042
Alignment:
| Q |
52 |
tactcaaaattctcaactaaaattttccaagtttctt |
88 |
Q |
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| T |
12637006 |
tactaaaaattctcaacaaaaattttccaagtttctt |
12637042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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