View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13731_low_16 (Length: 249)
Name: NF13731_low_16
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13731_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 15394332 - 15394112
Alignment:
| Q |
13 |
cagcacagaaaacttctgaaacaaatcaaaataacatagatcgaaaaattacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaacgttg |
112 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15394332 |
cagcgcagaaaacttctgaaacaaatcaaattaacatagatcgaaaaattacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaaagttg |
15394233 |
T |
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| Q |
113 |
caaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15394232 |
caaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctgg |
15394133 |
T |
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| Q |
213 |
tcgaatttctgttgcaaatcc |
233 |
Q |
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|| |||||||||||||||||| |
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| T |
15394132 |
tcaaatttctgttgcaaatcc |
15394112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 15385898 - 15385677
Alignment:
| Q |
13 |
cagcacagaaaacttctgaaacaaatcaaaataacatagatcgaaaaa-ttacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaacgtt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
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| T |
15385898 |
cagcgcagaaaacttctgaaacaaatcaaaataacatagatcgaaaaaattacttaaaatcacttaacagacatgtcgtagacatcaaaatttcaaagtt |
15385799 |
T |
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| Q |
112 |
gcaaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctg |
211 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15385798 |
gcaaattgcagtttcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttctgagccttcctgcttctgcatccattggctg |
15385699 |
T |
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| Q |
212 |
gtcgaatttctgttgcaaatcc |
233 |
Q |
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||| | |||||||| ||||||| |
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| T |
15385698 |
gtcaagtttctgttccaaatcc |
15385677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 38669678 - 38669738
Alignment:
| Q |
154 |
atcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtc |
214 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||| | ||||| |||||||| |
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| T |
38669678 |
atcatactttttctctgtacatattcctgagtcttcctgcctcttcctccataggctggtc |
38669738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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