View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13731_low_2 (Length: 595)

Name: NF13731_low_2
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13731_low_2
NF13731_low_2
[»] chr8 (17 HSPs)
chr8 (22-450)||(44903367-44903796)
chr8 (31-450)||(44916848-44917268)
chr8 (450-571)||(18439179-18439299)
chr8 (450-571)||(41855878-41855998)
chr8 (450-571)||(38872355-38872476)
chr8 (451-571)||(24862546-24862665)
chr8 (448-571)||(41016850-41016972)
chr8 (450-571)||(41276274-41276394)
chr8 (449-571)||(40703559-40703682)
chr8 (507-571)||(28168068-28168132)
chr8 (510-571)||(22550322-22550383)
chr8 (450-571)||(15031321-15031441)
chr8 (450-497)||(484327-484374)
chr8 (450-497)||(28168002-28168049)
chr8 (450-564)||(44051631-44051747)
chr8 (450-570)||(45065876-45065995)
chr8 (450-571)||(42604650-42604768)
[»] chr7 (23 HSPs)
chr7 (450-573)||(28113281-28113406)
chr7 (507-571)||(36392693-36392757)
chr7 (450-568)||(41623290-41623407)
chr7 (450-563)||(48271860-48271972)
chr7 (450-571)||(17840408-17840528)
chr7 (450-571)||(28978113-28978233)
chr7 (450-571)||(34142060-34142180)
chr7 (450-571)||(40589946-40590066)
chr7 (450-570)||(48194174-48194293)
chr7 (450-572)||(1641561-1641682)
chr7 (454-571)||(34157890-34158008)
chr7 (451-571)||(46861073-46861194)
chr7 (509-571)||(21186167-21186229)
chr7 (450-568)||(42683612-42683732)
chr7 (450-567)||(45362177-45362293)
chr7 (450-571)||(10225279-10225402)
chr7 (450-571)||(42504255-42504375)
chr7 (450-497)||(9366190-9366237)
chr7 (450-497)||(20565848-20565895)
chr7 (450-497)||(21186247-21186294)
chr7 (36-82)||(22195981-22196027)
chr7 (451-492)||(15900364-15900405)
chr7 (450-495)||(36392776-36392821)
[»] chr5 (21 HSPs)
chr5 (450-571)||(18309468-18309589)
chr5 (451-571)||(41202281-41202400)
chr5 (450-571)||(34682798-34682928)
chr5 (450-571)||(3602549-3602669)
chr5 (448-571)||(8539063-8539181)
chr5 (450-571)||(25499289-25499409)
chr5 (450-571)||(35566479-35566599)
chr5 (450-571)||(1399183-1399302)
chr5 (450-570)||(11347889-11348012)
chr5 (507-571)||(20199611-20199675)
chr5 (450-571)||(35926958-35927081)
chr5 (450-571)||(6231-6351)
chr5 (450-571)||(8575143-8575262)
chr5 (450-497)||(19035749-19035796)
chr5 (507-568)||(541462-541523)
chr5 (450-497)||(27660451-27660498)
chr5 (450-497)||(30710688-30710735)
chr5 (450-494)||(38855243-38855287)
chr5 (450-570)||(11028536-11028655)
chr5 (450-492)||(20199548-20199590)
chr5 (537-571)||(30886910-30886944)
[»] chr4 (27 HSPs)
chr4 (450-571)||(956331-956452)
chr4 (451-571)||(49422636-49422755)
chr4 (450-571)||(34152165-34152284)
chr4 (450-571)||(49572309-49572429)
chr4 (448-571)||(6281401-6281525)
chr4 (442-571)||(1043923-1044052)
chr4 (506-570)||(37959181-37959245)
chr4 (450-571)||(39589968-39590088)
chr4 (450-571)||(51427080-51427199)
chr4 (450-571)||(34528698-34528818)
chr4 (450-571)||(44559206-44559325)
chr4 (450-571)||(37867659-37867779)
chr4 (506-566)||(42887549-42887609)
chr4 (450-571)||(56140102-56140223)
chr4 (506-569)||(4784216-4784279)
chr4 (450-571)||(40352774-40352896)
chr4 (450-568)||(49095832-49095950)
chr4 (450-497)||(6176388-6176435)
chr4 (450-497)||(21016250-21016297)
chr4 (450-497)||(41793875-41793922)
chr4 (507-571)||(9718521-9718585)
chr4 (450-493)||(42887488-42887531)
chr4 (450-497)||(55797830-55797877)
chr4 (448-571)||(17292874-17292995)
chr4 (450-571)||(9490674-9490796)
chr4 (450-490)||(4784301-4784341)
chr4 (507-571)||(4910514-4910578)
[»] chr3 (30 HSPs)
chr3 (450-571)||(45099349-45099469)
chr3 (450-571)||(7247261-7247382)
chr3 (450-571)||(43571084-43571205)
chr3 (451-570)||(34646102-34646220)
chr3 (450-571)||(13894785-13894905)
chr3 (450-571)||(51694434-51694554)
chr3 (510-571)||(41579192-41579253)
chr3 (454-571)||(46345484-46345601)
chr3 (450-571)||(52568320-52568439)
chr3 (450-571)||(4003151-4003272)
chr3 (450-571)||(34692176-34692302)
chr3 (450-571)||(2267483-2267603)
chr3 (450-571)||(2429686-2429805)
chr3 (450-571)||(36136115-36136235)
chr3 (450-571)||(43478229-43478349)
chr3 (450-569)||(55267961-55268079)
chr3 (450-570)||(49611356-49611472)
chr3 (450-571)||(49217627-49217747)
chr3 (508-571)||(55205822-55205885)
chr3 (508-571)||(24701274-24701337)
chr3 (450-497)||(34050828-34050875)
chr3 (450-497)||(49139125-49139172)
chr3 (450-497)||(54391543-54391590)
chr3 (450-568)||(3494025-3494142)
chr3 (450-568)||(3497719-3497836)
chr3 (450-497)||(41579127-41579174)
chr3 (450-497)||(46406106-46406153)
chr3 (450-568)||(2645877-2645994)
chr3 (509-571)||(18441649-18441711)
chr3 (509-571)||(19486723-19486785)
[»] chr2 (19 HSPs)
chr2 (450-571)||(23408925-23409046)
chr2 (450-570)||(19470502-19470621)
chr2 (450-570)||(41497999-41498118)
chr2 (448-571)||(2918244-2918366)
chr2 (450-571)||(16583014-16583136)
chr2 (451-571)||(43492665-43492784)
chr2 (450-571)||(40676294-40676418)
chr2 (450-571)||(3942591-3942711)
chr2 (450-571)||(35492736-35492860)
chr2 (450-571)||(23786662-23786787)
chr2 (450-571)||(22002916-22003036)
chr2 (450-571)||(28476596-28476716)
chr2 (450-497)||(3936374-3936421)
chr2 (450-497)||(17425880-17425927)
chr2 (450-497)||(43983816-43983863)
chr2 (450-571)||(15890853-15890972)
chr2 (450-563)||(16413162-16413274)
chr2 (450-497)||(33404960-33405007)
chr2 (450-494)||(39798941-39798985)
[»] chr1 (24 HSPs)
chr1 (450-571)||(49397855-49397975)
chr1 (451-571)||(13974136-13974256)
chr1 (450-571)||(26634078-26634205)
chr1 (450-569)||(41803435-41803553)
chr1 (450-571)||(29437142-29437261)
chr1 (450-571)||(48227720-48227840)
chr1 (450-571)||(49428548-49428668)
chr1 (450-571)||(51271012-51271132)
chr1 (451-571)||(24362943-24363063)
chr1 (450-571)||(36911089-36911211)
chr1 (450-571)||(46142326-46142452)
chr1 (450-571)||(14172634-14172757)
chr1 (507-571)||(6436989-6437053)
chr1 (450-571)||(35525075-35525194)
chr1 (450-571)||(49925326-49925446)
chr1 (448-571)||(27485598-27485722)
chr1 (450-571)||(42570665-42570788)
chr1 (458-570)||(44336796-44336907)
chr1 (507-569)||(13284687-13284749)
chr1 (507-571)||(18974591-18974655)
chr1 (507-571)||(26494728-26494792)
chr1 (450-571)||(29761059-29761177)
chr1 (507-570)||(13634297-13634360)
chr1 (450-493)||(26494667-26494710)
[»] scaffold0176 (1 HSPs)
scaffold0176 (450-571)||(2985-3105)
[»] chr6 (13 HSPs)
chr6 (506-571)||(35020127-35020192)
chr6 (450-571)||(32026503-32026623)
chr6 (450-571)||(32036562-32036682)
chr6 (450-571)||(34802056-34802183)
chr6 (450-569)||(13404019-13404137)
chr6 (507-571)||(13616773-13616837)
chr6 (450-497)||(6206575-6206622)
chr6 (450-497)||(11693542-11693589)
chr6 (450-497)||(27641265-27641312)
chr6 (450-571)||(29067683-29067803)
chr6 (450-571)||(29109272-29109392)
chr6 (450-497)||(13616852-13616899)
chr6 (450-497)||(32691662-32691709)
[»] scaffold0192 (1 HSPs)
scaffold0192 (509-571)||(16963-17025)
[»] scaffold0859 (1 HSPs)
scaffold0859 (450-571)||(1545-1665)
[»] scaffold0618 (2 HSPs)
scaffold0618 (510-571)||(4435-4497)
scaffold0618 (454-494)||(4515-4555)
[»] scaffold0494 (1 HSPs)
scaffold0494 (450-497)||(5795-5842)


Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 22 - 450
Target Start/End: Original strand, 44903367 - 44903796
Alignment:
Q  22 caaattattattcaatcttgtattttactagaatttttaaaactcttctgatatgataagaaagaatcatcaagcaaaaatgaagtaaaa-actaaaaac 120  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  44903367 caaattattattcaatcttgtatgttagtagaattttaaaaactcttctgatatgataagaaagaatcagcaaccaaaaatgaattaaaaaactaaaaac 44903466  T
Q  121 gttgcttcatcattcatagtaactttgttgaatgattcgggaattcaagctgaagttttacatgataagttatagcttcatcacttgtctgttcatctgt 220  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44903467 tttgcttcatcattcatagtaactttgttgaatgatttgggaattcaagctgaagttttacatgataagttatagcttcatcacttgtctgttcatctgt 44903566  T
Q  221 ttgagtaaaaactgcaacaccatgaacaaatgcaaacgaacctgttcctcctaccactctgaattcttctctttcctcatgagcaactttgattgcttgc 320  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44903567 ttgagtaaaaactgcaacaccatgagcaaatgcaaacgaacctgttcctcctaccactctgaattcttctctttccttatgagcaactttgattgcttgc 44903666  T
Q  321 acactcaaactacctgaatgatctggtgtatcaaaagtgagatacaaaacattgaattctgattgctgaaactgttccacagggattatgaatccttgtg 420  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44903667 acactcaagctacctgaatgatctggtgtatcaaaagtgagatacaaaacattgaattctgattgctgaaactgttccacagggattatgaatccttgtg 44903766  T
Q  421 cttttcctacaacctttgatgtgttctctg 450  Q
    ||||||||||||||||||||||||||||||    
T  44903767 cttttcctacaacctttgatgtgttctctg 44903796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 31 - 450
Target Start/End: Original strand, 44916848 - 44917268
Alignment:
Q  31 attcaatcttgtattttactagaatttttaaaactcttctgatatgataagaaagaatcatcaagcaaaaatgaagtaaaa-actaaaaacgttgcttca 129  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||| ||||||||    
T  44916848 attcaatcttgtatgttagtagaattttaaaaactcttctgatatgataagaaagaatcagcaaccaaaaatgaattaaaaaactaaaaactttgcttca 44916947  T
Q  130 tcattcatagtaactttgttgaatgattcgggaattcaagctgaagttttacatgataagttatagcttcatcacttgtctgttcatctgtttgagtaaa 229  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44916948 tcattcatagtaactttgttgaatgatttgggaattcaagctgaagttttacatgataagttatagcttcatcacttgtctgttcatctgtttgagtaaa 44917047  T
Q  230 aactgcaacaccatgaacaaatgcaaacgaacctgttcctcctaccactctgaattcttctctttcctcatgagcaactttgattgcttgcacactcaaa 329  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  44917048 aactgcaacaccatgagcaaatgcaaacgaacctgttcctcctaccactctgaattcttctctttccttatgagcaactttgattgcttgcacactcaag 44917147  T
Q  330 ctacctgaatgatctggtgtatcaaaagtgagatacaaaacattgaattctgattgctgaaactgttccacagggattatgaatccttgtgcttttccta 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44917148 ctacctgaatgatctggtgtatcaaaagtgagatacaaaacattgaattctgattgctgaaactgttccacagggattatgaatccttgtgcttttccta 44917247  T
Q  430 caacctttgatgtgttctctg 450  Q
    |||||||||||||||||||||    
T  44917248 caacctttgatgtgttctctg 44917268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 18439299 - 18439179
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  | |||||||||| |||||||||| |||||||        | |||||||||||||||||||| |||||||||||||| ||||||    
T  18439299 gctcctcctcaacctggattgattgtacatcggcaccttcaaacccttctttttttc-ggaaccatcacaaacaattacgtgtcatgtcataggcgattt 18439201  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  18439200 ttctttgttcttctcatcaccc 18439179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 41855998 - 41855878
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||        | ||||||||||||||||||| |||| || |||||||  |||||    
T  41855998 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcacaaacaattctgtgccacgtcataggtgattt 41855900  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  41855899 ttctttgttcttctcatcaccc 41855878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 38872355 - 38872476
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  | ||||||||||||||||||||||||| |||         || |||||||||||||||||  ||| |||||||||| ||||||    
T  38872355 gctcctcctcaacctggattgattgtacaccggcaccttcgaactcttcttttttttcgaaaccatcacaaacaatttcgtgccatgtcataggcgattt 38872454  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  38872455 ttctttgttcttctcatcaccc 38872476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 451 - 571
Target Start/End: Original strand, 24862546 - 24862665
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttt 550  Q
    ||||||||||||||| | |||||||| ||| ||||||||||||||||        | ||||||||| |||||||||||||| || ||||||| |||||||    
T  24862546 ctcctcctcaacctcgagtgattgtataccagcaccttcgaacccttctttttttc-ggaaccatcgcaaacaattatgtgccacgtcataggcgatttt 24862644  T
Q  551 tctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||    
T  24862645 tctttgttcttctcatcaccc 24862665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 448 - 571
Target Start/End: Complemental strand, 41016972 - 41016850
Alignment:
Q  448 ctgctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||||        | ||||||||  |||||||||| ||| |||||||||| ||||    
T  41016972 ctgctcatcctcaacctcgtgtgattgtacaccggcaccttcgaacccttctttttttc-ggaaccattgcaaacaattacgtgccatgtcataggcgat 41016874  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||||    
T  41016873 ttttctttgttcttctcatcaccc 41016850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 41276274 - 41276394
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||        | ||||||||| |||||||||  ||| || ||||||| ||||||    
T  41276274 gctcctcctcaacctcgagtgattatacaccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaattccgtgccacgtcataggcgattt 41276372  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  41276373 ttctttgttcttctcatcaccc 41276394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 449 - 571
Target Start/End: Original strand, 40703559 - 40703682
Alignment:
Q  449 tgctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-cggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||          |||||||||||||||||||| |||| || |||||||  |||    
T  40703559 tgctcctcctcaacctctagtgattgtacaccgacaccttcgaactttttttttttcttcggaaccatcacaaacaattttgtgccacgtcataggtgat 40703658  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||||    
T  40703659 ttttctttgttcttctcatcaccc 40703682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 28168068 - 28168132
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||  ||| |||||||||| | ||||||||||||||||||||||||||    
T  28168068 cggaaccatcacaaacaatttcgtgccatgtcataggcaatttttctttgttcttctcatcaccc 28168132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 571
Target Start/End: Original strand, 22550322 - 22550383
Alignment:
Q  510 aaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||||| ||||||||| |||| || ||||||| ||||||||||||||||||||||||||||    
T  22550322 aaccatcgcaaacaattctgtgccacgtcataggcgatttttctttgttcttctcatcaccc 22550383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 15031441 - 15031321
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||         |||||||||| |||||||||   || || |||||||  |||||    
T  15031441 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaattccatgccacgtcataggtgattt 15031343  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||| |||||||||||||||    
T  15031342 ttcttttttcttctcatcaccc 15031321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 484374 - 484327
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  484374 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 484327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 28168002 - 28168049
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  28168002 gctcctcctcaacctcgactgattgtacaccgacaccttcgaaccctt 28168049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 564
Target Start/End: Original strand, 44051631 - 44051747
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc--cggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||| ||||||||| | ||||||||||||||||| |||||||||||           || ||||||| ||||||||| |||| || ||||||| ||||    
T  44051631 gctccttctcaacctcgagtgattgtacaccggcactttcgaacccttcttttttttttcgaaaccatcgcaaacaattctgtgccacgtcataggcgat 44051730  T
Q  548 ttttctttgttcttctc 564  Q
    |||||||||||||||||    
T  44051731 ttttctttgttcttctc 44051747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 570
Target Start/End: Original strand, 45065876 - 45065995
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||||||         |||||||||| |||||||||   || || |||||||  |||||    
T  45065876 gctcctccccaacctcgagtgattgtacactggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaatttcatgccacgtcataggtgattt 45065974  T
Q  550 ttctttgttcttctcatcacc 570  Q
    |||||| ||||||||||||||    
T  45065975 ttcttttttcttctcatcacc 45065995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 42604650 - 42604768
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||    ||         || ||||||||||||||||  |||| || |||||||  |||||    
T  42604650 gctcctcctcaacctcgagtgattgtacaccggcaccttcga---ttttttttctttcgaaaccatcacaaacaatactgtgccacgtcataggtgattt 42604746  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||| |||||||||||||||||    
T  42604747 ttctctgttcttctcatcaccc 42604768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 450 - 573
Target Start/End: Complemental strand, 28113406 - 28113281
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnn--ccggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  28113406 gctcctcctcaacctcgactgattgtacaccggcaccttcaaacccttatttttttttccggaaccatcacaaacaattatgtgtcatgtcatagacgat 28113307  T
Q  548 ttttctttgttcttctcatcacccag 573  Q
    ||||||||||||||||||||||||||    
T  28113306 ttttctttgttcttctcatcacccag 28113281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 507 - 571
Target Start/End: Complemental strand, 36392757 - 36392693
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36392757 cggaaccatcacaaacaattatgtgtcatgtcataggcgatttttctttgttcttctcatcaccc 36392693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 568
Target Start/End: Original strand, 41623290 - 41623407
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| ||        | |||||||||||||||||||  ||| |||||||||| ||||||    
T  41623290 gctcctcctcaacctcgactgattgtacaccgacaccttcgaaccattctttttttc-ggaaccatcacaaacaatttcgtgccatgtcataggcgattt 41623388  T
Q  550 ttctttgttcttctcatca 568  Q
    |||||||||||||||||||    
T  41623389 ttctttgttcttctcatca 41623407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 563
Target Start/End: Original strand, 48271860 - 48271972
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||        | |||||||||||||||||||  |||||||||||||| | ||||    
T  48271860 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttcttttttac-ggaaccatcacaaacaatttcgtgtcatgtcataggcaattt 48271958  T
Q  550 ttctttgttcttct 563  Q
    ||||||||||||||    
T  48271959 ttctttgttcttct 48271972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 17840408 - 17840528
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||        | ||||||||| |||||||||  ||| || ||||||| ||||||    
T  17840408 gctcctcctcaacctcgagtgattgtacaccggcacattcgaacccttctttttttc-ggaaccatcgcaaacaattcagtgccacgtcataggcgattt 17840506  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  17840507 ttctttgttcttctcatcaccc 17840528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 28978233 - 28978113
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||||        | |||||||||||||||||||  ||| || ||||||  ||||||    
T  28978233 gctcctcctcaacctcgagtgattgtacaccgggaccttcgaacccttctttttttc-ggaaccatcacaaacaattccgtgccacgtcatatgcgattt 28978135  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  28978134 ttctttgttcttctcatcaccc 28978113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 34142060 - 34142180
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||        | ||||||||| |||||||||  ||| || ||||||| ||||||    
T  34142060 gctcctcctcaacctcgagtgattgtactccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaatttcgtgccacgtcataggcgattt 34142158  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  34142159 ttctttgttcttctcatcaccc 34142180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 40589946 - 40590066
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||||        | ||||||||| ||||||||| |||| || ||| ||| ||||||    
T  40589946 gctcctcctcaacctcgagtgattgtacaccggcatcttcgaacccttctttttttc-ggaaccatcgcaaacaattctgtgccacgtcgtaggcgattt 40590044  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  40590045 ttctttgttcttctcatcaccc 40590066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 450 - 570
Target Start/End: Original strand, 48194174 - 48194293
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||| ||||||||||||||||        ||  ||||||| |||||||||  |||||||||||||| ||||||    
T  48194174 gctcctcctcaacctcgagtgattgtacaccagcaccttcgaacccttctttttttcca-aaccatcgcaaacaatttcgtgtcatgtcataggcgattt 48194272  T
Q  550 ttctttgttcttctcatcacc 570  Q
    || ||||||||||||||||||    
T  48194273 ttatttgttcttctcatcacc 48194293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 572
Target Start/End: Complemental strand, 1641682 - 1641561
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    ||||||||||||||||   ||||||||||||||||||||| || ||||        | ||||||||||||  |||||||||| |||||||||| ||||||    
T  1641682 gctcctcctcaacctcgtttgattgtacaccggcaccttcaaatccttcttttttac-ggaaccatcacattcaattatgtgccatgtcataggcgattt 1641584  T
Q  550 ttctttgttcttctcatcaccca 572  Q
    |||||| ||||||||||||||||    
T  1641583 ttctttcttcttctcatcaccca 1641561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 454 - 571
Target Start/End: Original strand, 34157890 - 34158008
Alignment:
Q  454 ctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttc 552  Q
    |||||||||||| | |||||||||||||||||||||||||||||          |||||||||| ||||||||| |||| || | ||||| |||||||||    
T  34157890 ctcctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttttttcggaaccatcgcaaacaattttgtgccacggcataggcgatttttc 34157989  T
Q  553 tttgttcttctcatcaccc 571  Q
    |||||||||||||||||||    
T  34157990 tttgttcttctcatcaccc 34158008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 571
Target Start/End: Complemental strand, 46861194 - 46861073
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-cggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||          ||||||||||||||||||||   |||||| |||||  ||||||    
T  46861194 ctcctcctcaatctcgagtgattgtacaccggcaccttcgaacccttctttttttttcggaaccatcacaaacaattccatgtcatatcataagcgattt 46861095  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  46861094 ttctttgttcttctcatcaccc 46861073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 509 - 571
Target Start/End: Complemental strand, 21186229 - 21186167
Alignment:
Q  509 gaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||||||    
T  21186229 gaaccatcacaaacaattctgtgtcatgtcatatgcaatttttctttgttcttctcatcaccc 21186167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 568
Target Start/End: Original strand, 42683612 - 42683732
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggc---accttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacga 546  Q
    |||||||||||||||| | |||||||||||||||   ||||||||||||||        | |||||||||||||||||||  ||| |||| ||||| |||    
T  42683612 gctcctcctcaacctcgagtgattgtacaccggcggcaccttcgaacccttctttttttc-ggaaccatcacaaacaattcagtgccatgccataggcga 42683710  T
Q  547 tttttctttgttcttctcatca 568  Q
    ||||||||||||||||||||||    
T  42683711 tttttctttgttcttctcatca 42683732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 45362293 - 45362177
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||         | | |||||| |||||||||  |||||| ||||||| ||||||    
T  45362293 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt-ctttttttctgtaccatcgcaaacaatttcgtgtcacgtcataggcgattt 45362195  T
Q  550 ttctttgttcttctcatc 567  Q
    ||||||||| ||||||||    
T  45362194 ttctttgtttttctcatc 45362177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 10225279 - 10225402
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccg--gaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| ||             ||||||||||||||||||  ||| ||| |||||| ||||    
T  10225279 gctcctcctcaacctcgactgattgtacaccggcaccttcaaacctttttttttttttttagaaccatcacaaacaattccgtgccatatcataggcgat 10225378  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||||    
T  10225379 ttttctttgttcttctcatcaccc 10225402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 42504375 - 42504255
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||         |||||||||| |||||||||   || || |||||||  |||||    
T  42504375 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaattccatgccacgtcataggagattt 42504277  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||| |||||||||||||||    
T  42504276 ttcttttttcttctcatcaccc 42504255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 9366237 - 9366190
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  9366237 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 9366190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 20565848 - 20565895
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  20565848 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 20565895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 21186294 - 21186247
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||  | |||||||| ||||||||||||||||||||    
T  21186294 gctcctcctcaacctggattgattgtataccggcaccttcgaaccctt 21186247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 22196027 - 22195981
Alignment:
Q  36 atcttgtattttactagaatttttaaaactcttctgatatgataaga 82  Q
    |||||| || ||| ||||||||| |||||||||||||||||||||||    
T  22196027 atcttgaatgttagtagaattttaaaaactcttctgatatgataaga 22195981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 492
Target Start/End: Complemental strand, 15900405 - 15900364
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaa 492  Q
    |||||||||| |||| |||||||||||||| |||||||||||    
T  15900405 ctcctcctcagcctcgactgattgtacaccagcaccttcgaa 15900364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 36392821 - 36392776
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccc 495  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||    
T  36392821 gctcctcctcaacctggactgattgtacaatggcaccttcgaaccc 36392776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 18309468 - 18309589
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||| ||||||    
T  18309468 gctcctcctcaacctggactgattgtacaccggcaccttcgaacccttcttttttttcggaaccatcacaaacaattatgtgtcatgtcataggcgattt 18309567  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  18309568 ttctttgttcttctcatcaccc 18309589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 571
Target Start/End: Complemental strand, 41202400 - 41202281
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttt 550  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||        | |||||||||||||||||||||||| |||||||||| |||||||    
T  41202400 ctcctcctcaacctcaagtgattgtacaccggcaccttcgaaccattttttttttc-ggaaccatcacaaacaattatgtgccatgtcatagccgatttt 41202302  T
Q  551 tctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||    
T  41202301 tctttgttcttctcatcaccc 41202281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 34682928 - 34682798
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc---------cggaaccatcacaaacaattatgtgtcatgtcat 540  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||        |         ||||||||||||||||||||||||| ||||||||    
T  34682928 gctcctcctcaacctcgactgattgtacaccgtcaccttcgaacccttctttttttctttctttctcggaaccatcacaaacaattatgtgccatgtcat 34682829  T
Q  541 agacgatttttctttgttcttctcatcaccc 571  Q
    || ||||||||||||||||||||||||||||    
T  34682828 aggcgatttttctttgttcttctcatcaccc 34682798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 3602549 - 3602669
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||        | |||||||||||||||||||  ||| |||||| ||| ||||||    
T  3602549 gctcctcctcaacctggactgattgtacaccgccaccttcgaacccttctttttttc-ggaaccatcacaaacaatttcgtgccatgtcgtaggcgattt 3602647  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  3602648 ttctttgttcttctcatcaccc 3602669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 448 - 571
Target Start/End: Original strand, 8539063 - 8539181
Alignment:
Q  448 ctgctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||         |||||||||| |||||||||  ||| || |||||||  |||    
T  8539063 ctgctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt-----ctttcggaaccatcgcaaacaatttcgtgccacgtcataggtgat 8539157  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||||    
T  8539158 ttttctttgttcttctcatcaccc 8539181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 25499289 - 25499409
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||        | ||||||||||||||||||| | || |||||||||  | ||||    
T  25499289 gctcctcctccacctggactgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcacaaacaattctatgccatgtcataagcaattt 25499387  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  25499388 ttctttgttcttctcatcaccc 25499409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 35566479 - 35566599
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    ||||| |||||||||| |||| |||||||| |||||||||||||| ||         |||||||||||||||||||| |||| |||||||||| ||| ||    
T  35566479 gctccgcctcaacctcgactggttgtacactggcaccttcgaaccttttttttctttcggaaccatcacaaacaattttgtgccatgtcataggcga-tt 35566577  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  35566578 ttctttgttcttctcatcaccc 35566599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 1399302 - 1399183
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  ||| |||||||||||||||||| ||||||||        | |||| |||||||||||||| |||| |||||||||| | ||||    
T  1399302 gctcctcctcaacctagactaattgtacaccggcacctttgaacccttctttttttc-ggaatcatcacaaacaattctgtgccatgtcatag-caattt 1399205  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||| ||||||||||||||||    
T  1399204 ttcttcgttcttctcatcaccc 1399183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 570
Target Start/End: Original strand, 11347889 - 11348012
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtca---tgtcatagacga 546  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||         |||||||||| |||||||||   || ||    ||||||| |||    
T  11347889 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttcttttttttcggaaccatcgcaaacaattccatgccacgtcgtcataggcga 11347988  T
Q  547 tttttctttgttcttctcatcacc 570  Q
    ||||||||||||||||||||||||    
T  11347989 tttttctttgttcttctcatcacc 11348012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 20199611 - 20199675
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||||| ||||||| |||| |||||||| | ||||||||||||||||||||||||||||    
T  20199611 cggaaccatcactaacaattttgtgccatgtcatgggcgatttttctttgttcttctcatcaccc 20199675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 35927081 - 35926958
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccc--ttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||  ||          ||||||||||||||||||| |||| |||||| ||| |||     
T  35927081 gctcctcctcaacctcgactgattgtacatcggcaccttcgaacccttttttttttttttggaaccatcacaaacaattttgtgccatgtcgtaggcgaa 35926982  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    |||||||| ||||| |||||||||    
T  35926981 ttttctttcttcttgtcatcaccc 35926958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 6351 - 6231
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||         | |||||||| |||||||||   || ||  |||||| ||||||    
T  6351 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt-ctttttttcagaaccatcgcaaacaattccatgccacatcataggcgattt 6253  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||| |||||||||||||||    
T  6252 ttcttttttcttctcatcaccc 6231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 8575262 - 8575143
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||        |||||||||  |||||||||   || || |||||||  |||||    
T  8575262 gctcctcctcaacctcgagtgattgtacactggcaccttcgaacccttatttttt--cggaaccatggcaaacaattccatgccacgtcataggtgattt 8575165  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||| |||||||||||||||    
T  8575164 ttcttttttcttctcatcaccc 8575143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 19035796 - 19035749
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  19035796 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 19035749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 568
Target Start/End: Complemental strand, 541523 - 541462
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatca 568  Q
    |||||||||| |||||||||  ||| || ||||||| |||||||||||||||||||||||||    
T  541523 cggaaccatcgcaaacaatttcgtgccacgtcataggcgatttttctttgttcttctcatca 541462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 27660498 - 27660451
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  27660498 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctt 27660451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 30710688 - 30710735
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  30710688 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctt 30710735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 38855243 - 38855287
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacc 494  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||    
T  38855243 gctcctcctcaacctcgagtgattgtacactggcaccttcgaacc 38855287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 570
Target Start/End: Original strand, 11028536 - 11028655
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| ||||||||| |||| ||         |||||||||| |||||||||   || || |||||||  |||||    
T  11028536 gctcctcctcaacctcgagtgattgtacactggcaccttcaaaccatt-ctttttttcggaaccatcgcaaacaattccatgccacgtcataggagattt 11028634  T
Q  550 ttctttgttcttctcatcacc 570  Q
    |||||| ||||||||||||||    
T  11028635 ttcttttttcttctcatcacc 11028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 20199548 - 20199590
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaa 492  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  20199548 gctcctcctcaacctggactgattgtacaccgacaccttcgaa 20199590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Original strand, 30886910 - 30886944
Alignment:
Q  537 tcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||| ||||||||||||||||||||||||||||    
T  30886910 tcataggcgatttttctttgttcttctcatcaccc 30886944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 956452 - 956331
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||         ||||||||||||||| |||||| ||||||||||||| ||||||    
T  956452 gctcctcctcaacctggactgattgtacaccggcaccttcgaacccttcttttttttcggaaccatcacaaataattatatgtcatgtcataggcgattt 956353  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  956352 ttctttgttcttctcatcaccc 956331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 571
Target Start/End: Complemental strand, 49422755 - 49422636
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttt 550  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||  ||||||    
T  49422755 ctcctcctcaacctcgactgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcacaaacaattatgtgtcatgtcataggtgatttt 49422657  T
Q  551 tctttgttcttctcatcaccc 571  Q
    ||||||| |||||||||||||    
T  49422656 tctttgtccttctcatcaccc 49422636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 34152284 - 34152165
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||||||  |||||||||||||| | ||||    
T  34152284 gctcctcctcaacctcgactgattgtacaccggcaccttcgaacccttctttttt--cggaaccatcacaaacaatttcgtgtcatgtcataggcaattt 34152187  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  34152186 ttctttgttcttctcatcaccc 34152165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 49572309 - 49572429
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||        | ||||||||||||||||||||||||  ||||||||| ||||||    
T  49572309 gctcctcctcaacctggactgattgtacaccggcaccctcgaacccttctttttttc-ggaaccatcacaaacaattatgtgctatgtcataggcgattt 49572407  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  49572408 ttctttgttcttctcatcaccc 49572429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 448 - 571
Target Start/End: Complemental strand, 6281525 - 6281401
Alignment:
Q  448 ctgctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-cggaaccatcacaaacaattatgtgtcatgtcatagacga 546  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||| |||||||  ||    
T  6281525 ctgctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttttttttttttcggaaccatcacaaacaattttgtgtcacgtcataggtga 6281426  T
Q  547 tttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||||    
T  6281425 tttttctttgttcttctcatcaccc 6281401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 442 - 571
Target Start/End: Original strand, 1043923 - 1044052
Alignment:
Q  442 tgttctct-gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcat 540  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||        | ||||||||| |||||||||||||| || |||||    
T  1043923 tgttctctcgctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaattatgtgccacgtcat 1044021  T
Q  541 agacgatttttctttgttcttctcatcaccc 571  Q
    |  ||||||||||||||||||||||||||||    
T  1044022 atgcgatttttctttgttcttctcatcaccc 1044052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 37959181 - 37959245
Alignment:
Q  506 ccggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcacc 570  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37959181 ccggaaccatcacaaacaattatgtgtcatgtcataggcgatttttctttgttcttctcatcacc 37959245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 39589968 - 39590088
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||         |||||||||| |||||||||| ||| || ||||||| | ||||    
T  39589968 gctcctcctcaacctcaagtgattgtacaccggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaattacgtgacacgtcataggcaattt 39590066  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  39590067 ttctttgttcttctcatcaccc 39590088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 51427199 - 51427080
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| ||| ||||||||| |||||||||||| ||||         ||||||||||||||||||||  |||||||||||||  ||||||    
T  51427199 gctcctcctcaacctcgactaattgtacactggcaccttcgaatccttcttttttttcggaaccatcacaaacaatt--gtgtcatgtcatacgcgattt 51427102  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  51427101 ttctttgttcttctcatcaccc 51427080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 34528818 - 34528698
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||        | ||||||||| |||||||||  ||| || ||||||| ||||||    
T  34528818 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaatttcgtgccacgtcataggcgattt 34528720  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  34528719 ttctttgttcttctcatcaccc 34528698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 44559325 - 44559206
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||         | ||||||||||||||||||   ||||||||||||| ||||||    
T  44559325 gctcctcctcaacctcgactgattgtacaccggcaccttcaaacccttctttttt--cagaaccatcacaaacaatttcatgtcatgtcataggcgattt 44559228  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||||||||||| |||||||    
T  44559227 ttctttgttcttcttatcaccc 44559206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 37867659 - 37867779
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||||        |||||||||||||||||||| |||| ||  |||||| ||||||    
T  37867659 gctcctcctcaacctcgagtgattatacaccggcaccttcgaacccttattttttt-cggaaccatcacaaacaattttgtgccacatcataggcgattt 37867757  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||| |||| |||||||    
T  37867758 ttctttgttattcttatcaccc 37867779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 506 - 566
Target Start/End: Original strand, 42887549 - 42887609
Alignment:
Q  506 ccggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcat 566  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  42887549 ccggaaccatcacaaacaattccgtgtcatgtcatagacgatttttctttgttcttctcat 42887609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 56140102 - 56140223
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||         | |||||||| |||||||||  ||| || ||||||| ||||||    
T  56140102 gctcctcctcaacctcgagtgattgtacactggcaccttcgaacccttcttttttttcagaaccatcgcaaacaattccgtgccacgtcataggcgattt 56140201  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  56140202 ttctttgttcttctcatcaccc 56140223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 506 - 569
Target Start/End: Complemental strand, 4784279 - 4784216
Alignment:
Q  506 ccggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcac 569  Q
    |||||||||||||||||||||  ||| ||| ||||||| |||||||||||||||||||||||||    
T  4784279 ccggaaccatcacaaacaattccgtgccatttcatagatgatttttctttgttcttctcatcac 4784216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 40352896 - 40352774
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt-annnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatt 548  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||          |||||||||| |||||||||   || || |||||||  ||||    
T  40352896 gctcctcctcaacctcgactgattgtacactggcaccttcgaacccttctttttttttcggaaccatcgcaaacaattccatgccacgtcataggtgatt 40352797  T
Q  549 tttctttgttcttctcatcaccc 571  Q
    ||||||| |||||||||||||||    
T  40352796 tttcttttttcttctcatcaccc 40352774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 568
Target Start/End: Original strand, 49095832 - 49095950
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||         |||||||||| |||||||||   || ||||||||||  || ||    
T  49095832 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttcttttttttcggaaccatcgcaaacaattccatgccatgtcataggtgactt 49095931  T
Q  550 ttctttgttcttctcatca 568  Q
    |||||| ||| ||||||||    
T  49095932 ttcttttttcgtctcatca 49095950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 6176435 - 6176388
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  6176435 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 6176388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 21016297 - 21016250
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  21016297 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 21016250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 41793922 - 41793875
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  41793922 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 41793875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 9718521 - 9718585
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||||||  | |||||||| ||||||| |||||||||| |||| |||||||||||||||    
T  9718521 cggaaccatcacattcgattatgtgccatgtcacagacgattttgctttcttcttctcatcaccc 9718585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 493
Target Start/End: Original strand, 42887488 - 42887531
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaac 493  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  42887488 gctcctcctcaacctcgactgattgtacaccagcaccttcgaac 42887531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 55797830 - 55797877
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  55797830 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctt 55797877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 571
Target Start/End: Original strand, 17292874 - 17292995
Alignment:
Q  448 ctgctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    ||||||||||||| |||  | || ||||||||||||||||||||| ||||         |||||||||||||  | |||||||| ||||||| ||  |||    
T  17292874 ctgctcctcctcagccttgaatggttgtacaccggcaccttcgaatcctttttttta--cggaaccatcacattcgattatgtgccatgtcacaggagat 17292971  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    |||||||| |||||||||||||||    
T  17292972 ttttctttcttcttctcatcaccc 17292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 9490674 - 9490796
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-cggaaccatcacaaacaattatgtgtcatgtcatagacgatt 548  Q
    |||||||||||||||| | ||||||||||||| ||| |||||||| ||          |||||||||  |||||||||  ||| || |||||||  ||||    
T  9490674 gctcctcctcaacctcgagtgattgtacaccgacacattcgaacctttttttttttttcggaaccattgcaaacaatttcgtgccacgtcataggtgatt 9490773  T
Q  549 tttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||    
T  9490774 tttctttgttcttctcatcaccc 9490796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 4784341 - 4784301
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcg 490  Q
    |||||||||||||||| | |||||||||||||||| |||||    
T  4784341 gctcctcctcaacctcgaatgattgtacaccggcaacttcg 4784301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 571
Target Start/End: Complemental strand, 4910578 - 4910514
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||||||  | ||| |||| |||||||||| ||||||| |||| ||||| |||||||||    
T  4910578 cggaaccatcacattcgattttgtgccatgtcataggcgattttgctttcttcttgtcatcaccc 4910514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 45099469 - 45099349
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||  |||||    
T  45099469 gctcatcctcaacctcgactgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcacaaacaattatgtgtcatgtcataggtgattt 45099371  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  45099370 ttctttgttcttctcatcaccc 45099349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 7247261 - 7247382
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||         |||||||||| ||||||||| ||||||||||||||| ||||||    
T  7247261 gctcctcctcaacctggactgattgtacaccgacaccttcgaacccttcttttttttcggaaccatctcaaacaattttgtgtcatgtcataggcgattt 7247360  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  7247361 ttctttgttcttctcatcaccc 7247382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 43571084 - 43571205
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||         ||||||||||||||||||||  ||| |||||||||| ||||||    
T  43571084 gctcctcctcaacctcgactgattgtacatcggcaccttcgaacccttcttttttttcggaaccatcacaaacaattcagtgccatgtcataggcgattt 43571183  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  43571184 ttctttgttcttctcatcaccc 43571205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 451 - 570
Target Start/End: Complemental strand, 34646220 - 34646102
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttt 550  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||        | ||||||||||||||||||| |||| |||||||||| |||||||    
T  34646220 ctcctcctcaacctcgattgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcacaaacaattttgtgccatgtcataggcgatttt 34646122  T
Q  551 tctttgttcttctcatcacc 570  Q
    ||||||||||||||||||||    
T  34646121 tctttgttcttctcatcacc 34646102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 13894905 - 13894785
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||        | |||||||||||||||||||  ||| || ||||||||||||||    
T  13894905 gctcctcctcaacctcgaatgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcacaaacaatttcgtgccacgtcatagacgattt 13894807  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  13894806 ttctttgttcttctcatcaccc 13894785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 51694554 - 51694434
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||        | ||||||||| |||||||||||||| || ||||||| ||||||    
T  51694554 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaattatgtgccacgtcataggcgattt 51694456  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||| ||||||||||||    
T  51694455 ttctttgttattctcatcaccc 51694434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 510 - 571
Target Start/End: Original strand, 41579192 - 41579253
Alignment:
Q  510 aaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41579192 aaccatcacaaacaattatgtgtcatgtcataggcgatttttctttgttcttctcatcaccc 41579253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 571
Target Start/End: Complemental strand, 46345601 - 46345484
Alignment:
Q  454 ctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttttct 553  Q
    |||||||||||  |||||||||||||||||||||||| ||| ||         ||||||||||||||||||||  ||| |||||||||| ||||||||||    
T  46345601 ctcctcaacctggactgattgtacaccggcaccttcggaccattcttttttttcggaaccatcacaaacaatttcgtgccatgtcataggcgatttttct 46345502  T
Q  554 ttgttcttctcatcaccc 571  Q
    ||||||||||||||||||    
T  46345501 ttgttcttctcatcaccc 46345484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 52568439 - 52568320
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||         | |||| |||||||||||||  ||| || ||||||||||||||    
T  52568439 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttt--ctgaactatcacaaacaatttcgtgccacgtcatagacgattt 52568342  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  52568341 ttctttgttcttctcatcaccc 52568320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 4003272 - 4003151
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||         ||||||||||||||||||||   ||  | || |||| ||||||    
T  4003272 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttcttttttttcggaaccatcacaaacaatttcatgcaacgttataggcgattt 4003173  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  4003172 ttctttgttcttctcatcaccc 4003151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 34692302 - 34692176
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnncc-----ggaaccatcacaaacaattatgtgtcatgtcatagac 544  Q
    |||||||||||||||| | |||||||||||||||||||||||||| ||        ||     ||||||||| |||||||||  ||| |||||||||| |    
T  34692302 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccttttttttcttccttttcggaaccatcgcaaacaattccgtgccatgtcataggc 34692203  T
Q  545 gatttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||||||    
T  34692202 gatttttctttgttcttctcatcaccc 34692176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 2267603 - 2267483
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||        |||||||||| |||| ||||   || || ||||||| ||||||    
T  2267603 gctcctcctcaacctcgagtgattgtacaccgacaccttcgaacccttattttttt-cggaaccatcgcaaataattccatgccacgtcataggcgattt 2267505  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  2267504 ttctttgttcttctcatcaccc 2267483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 2429686 - 2429805
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||         |||||||||| |||||||||  ||| |||||||||   |||||    
T  2429686 gctcctgctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttt--cggaaccatcgcaaacaattccgtgccatgtcatatgagattt 2429783  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  2429784 ttctttgttcttctcatcaccc 2429805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 36136115 - 36136235
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||         ||||| |||| |||||||||  ||| || |||||||  |||||    
T  36136115 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt-ctttttttcggaatcatcgcaaacaattccgtgccacgtcataggtgattt 36136213  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  36136214 ttctttgttcttctcatcaccc 36136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 43478229 - 43478349
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||||        | ||||||||| |||||||||  ||| || ||||||| ||||||    
T  43478229 gctcctcctcaacctcgagtgattgtacacagacaccttcgaacccttctttttttc-ggaaccatcgcaaacaatttcgtgccacgtcataggcgattt 43478327  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  43478328 ttctttgttcttctcatcaccc 43478349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 569
Target Start/End: Complemental strand, 55268079 - 55267961
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||| ||||| ||        ||||||||||||||||||||| |||| ||  ||||||  |||||    
T  55268079 gctcctcctcaacctcgagtgattgtacaccggcacctttgaaccttt-tttttttccggaaccatcacaaacaattctgtgccacatcataggtgattt 55267981  T
Q  550 ttctttgttcttctcatcac 569  Q
    |||||||||||||| |||||    
T  55267980 ttctttgttcttcttatcac 55267961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 570
Target Start/End: Original strand, 49611356 - 49611472
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||| |||||   |||||||       | ||||||||| |||||||||  ||| || ||||||||||||||    
T  49611356 gctcctcctcaacctcgagtgattgtacaccggtacctt---acccttatttttttc-ggaaccatcgcaaacaattccgtgccacgtcatagacgattt 49611451  T
Q  550 ttctttgttcttctcatcacc 570  Q
    |||||||||||||||||||||    
T  49611452 ttctttgttcttctcatcacc 49611472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 49217747 - 49217627
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||| |||||||||||| |||        | ||||||||| |||||||||   || |||||||||| ||||||    
T  49217747 gctcctcctcaacctcgagtgattgtacacccgcaccttcgaactcttctttttttc-ggaaccatcgcaaacaattccatgccatgtcataggcgattt 49217649  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||| ||||||||||||||||||    
T  49217648 ttcgttgttcttctcatcaccc 49217627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 508 - 571
Target Start/End: Complemental strand, 55205885 - 55205822
Alignment:
Q  508 ggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||| |||| || |||||||  |||||||||||||||||||||||||||    
T  55205885 ggaaccatcacaaacaattttgtgccacgtcataggtgatttttctttgttcttctcatcaccc 55205822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 571
Target Start/End: Complemental strand, 24701337 - 24701274
Alignment:
Q  508 ggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||||||  ||||||||| |||| || ||||||| ||||||||||||||||||||||||||||    
T  24701337 ggaaccattgcaaacaattttgtgccacgtcataggcgatttttctttgttcttctcatcaccc 24701274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 34050828 - 34050875
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  34050828 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 34050875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 49139172 - 49139125
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  49139172 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 49139125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 54391543 - 54391590
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  54391543 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 54391590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 450 - 568
Target Start/End: Complemental strand, 3494142 - 3494025
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    ||||||||| |||||| | |||||||| ||||||||||||||||||||         |||||||||| |||||||||   ||||| |||||||  |||||    
T  3494142 gctcctcctgaacctccagtgattgtaaaccggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaattccatgtcacgtcataggtgattt 3494044  T
Q  550 ttctttgttcttctcatca 568  Q
    |||||| ||||||||||||    
T  3494043 ttcttttttcttctcatca 3494025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 450 - 568
Target Start/End: Complemental strand, 3497836 - 3497719
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    ||||||||| |||||| | |||||||| ||||||||||||||||||||         |||||||||| |||||||||   ||||| |||||||  |||||    
T  3497836 gctcctcctgaacctccagtgattgtaaaccggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaattccatgtcacgtcataggtgattt 3497738  T
Q  550 ttctttgttcttctcatca 568  Q
    |||||| ||||||||||||    
T  3497737 ttcttttttcttctcatca 3497719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 41579127 - 41579174
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||||    
T  41579127 gctcctcctcaacctggactgattgtacaccggcaccttcaaaccctt 41579174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 46406106 - 46406153
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||||    
T  46406106 gctcctcctcaacctcgagtgattgtacatcggcaccttcgaaccctt 46406153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 568
Target Start/End: Complemental strand, 2645994 - 2645877
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  | ||||||||||| |||||||||||||||||         |||||||||| |||||||||   || || |||||||  |||||    
T  2645994 gctcctcctcaaccttgagtgattgtacactggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaattccatgccacgtcataggtgattt 2645896  T
Q  550 ttctttgttcttctcatca 568  Q
    |||||| ||||||||||||    
T  2645895 ttcttttttcttctcatca 2645877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 571
Target Start/End: Original strand, 18441649 - 18441711
Alignment:
Q  509 gaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||||  | |||  |||||||||||||| |||||||||||| ||||| |||||||||    
T  18441649 gaaccatcacattcgatttcgtgtcatgtcataggcgatttttctttcttcttgtcatcaccc 18441711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 571
Target Start/End: Original strand, 19486723 - 19486785
Alignment:
Q  509 gaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||||  | |||  |||||||||||||| |||||||||||| ||||| |||||||||    
T  19486723 gaaccatcacattcgatttcgtgtcatgtcataggcgatttttctttcttcttgtcatcaccc 19486785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 23408925 - 23409046
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||         | |||||||||||||||||| ||||||||||||||| ||||||    
T  23408925 gctcctcctcaaactcgactgattgtacaccggcaccttcgaacccttcttttttttcagaaccatcacaaacaattctgtgtcatgtcataggcgattt 23409024  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  23409025 ttctttgttcttctcatcaccc 23409046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 450 - 570
Target Start/End: Complemental strand, 19470621 - 19470502
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  |||||||||||||||  ||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  19470621 gctcctcctcaacctggactgattgtacaccgagaccttcgaacccttctttttttc-ggaaccatcacaaacaattatgtgtcatgtcatagacgattt 19470523  T
Q  550 ttctttgttcttctcatcacc 570  Q
    |||||| ||||||||||||||    
T  19470522 ttctttattcttctcatcacc 19470502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 450 - 570
Target Start/End: Complemental strand, 41498118 - 41497999
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||  |||||||||||||||||||||||||||| ||        | |||||||||||||||||||||||| |||||||||| ||||||    
T  41498118 gctcctcctcaacctggactgattgtacaccggcaccttcgaacctttcattttttc-ggaaccatcacaaacaattatgtgccatgtcataggcgattt 41498020  T
Q  550 ttctttgttcttctcatcacc 570  Q
    |||||||||||||||||||||    
T  41498019 ttctttgttcttctcatcacc 41497999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 571
Target Start/End: Complemental strand, 2918366 - 2918244
Alignment:
Q  448 ctgctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||        || ||||||||||||||||| |||| ||||||||||  |||    
T  2918366 ctgctcctcctcaacctcgactgattgtacaccggcaccttcgaacccttattttttt-cgaaaccatcacaaacaattctgtgccatgtcataggtgat 2918268  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    |||||||| |||||||||||||||    
T  2918267 ttttctttattcttctcatcaccc 2918244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 16583014 - 16583136
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-cggaaccatcacaaacaattatgtgtcatgtcatagacgatt 548  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||          |||||||||||||||||||| |||| || |||||||||||||    
T  16583014 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttttttcggaaccatcacaaacaattttgtgccacgtcatagacgatt 16583113  T
Q  549 tttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||    
T  16583114 tttctttgttcttctcatcaccc 16583136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 451 - 571
Target Start/End: Original strand, 43492665 - 43492784
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttt 550  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||        | |||||||||||||||||||||||| |||||||||| |||||||    
T  43492665 ctcctcgtcaacctggactgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcacaaacaattatgtgccatgtcataggcgatttt 43492763  T
Q  551 tctttgttcttctcatcaccc 571  Q
    |||||||||||||| ||||||    
T  43492764 tctttgttcttctcttcaccc 43492784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 40676418 - 40676294
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnn---ccggaaccatcacaaacaattatgtgtcatgtcatagacga 546  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||           |||||||||||||||||||||  |||||||||||||| | |    
T  40676418 gctcctcctcaaccttgactgattgtacaccggcaccttcgaatccttttttttcttttccggaaccatcacaaacaatttcgtgtcatgtcataggcaa 40676319  T
Q  547 tttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||||    
T  40676318 tttttctttgttcttctcatcaccc 40676294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 3942591 - 3942711
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||         || ||||||| ||||||||| |||| || ||||||| ||||||    
T  3942591 gctcctcctcaacctcaagtgattgtacaccggcaccttcgaaccctt-ctttttttcgaaaccatcgcaaacaattctgtgccacgtcataggcgattt 3942689  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||| ||||||||||||||    
T  3942690 ttctttgctcttctcatcaccc 3942711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 35492736 - 35492860
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc---cggaaccatcacaaacaattatgtgtcatgtcatagacga 546  Q
    |||||||||||||||| | | |||||||||||||||||||||||| ||            |||||||||||||||||||| |||| || |||||||||||    
T  35492736 gctcctcctcaacctcgagtaattgtacaccggcaccttcgaaccttttttttttcttttcggaaccatcacaaacaattttgtgccacgtcatagacga 35492835  T
Q  547 tttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||||    
T  35492836 tttttctttgttcttctcatcaccc 35492860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 23786787 - 23786662
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc----cggaaccatcacaaacaattatgtgtcatgtcatagacg 545  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||             |||||||||| ||||||||| |||| || | ||||| ||    
T  23786787 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctttttttttctttttcggaaccatcgcaaacaattctgtgccacgccataggcg 23786688  T
Q  546 atttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||||||    
T  23786687 atttttctttgttcttctcatcaccc 23786662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 22002916 - 22003036
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||         |||||||||| |||||||||   || || |||||||  |||||    
T  22002916 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaatttcatgccacgtcataggtgattt 22003014  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||| |||||||||||||||    
T  22003015 ttcttttttcttctcatcaccc 22003036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 28476596 - 28476716
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||         |||||||||| |||||||||   || || |||||||  |||||    
T  28476596 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctt-ctttttttcggaaccatcgcaaacaattccatgccacgtcataggtgattt 28476694  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||| |||||||||||||||    
T  28476695 ttcttttttcttctcatcaccc 28476716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 3936421 - 3936374
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  3936421 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 3936374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 17425880 - 17425927
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  17425880 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 17425927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 43983816 - 43983863
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  43983816 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 43983863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 15890972 - 15890853
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    ||||||||||||||| || ||||||||||||  |||||||||| ||||         |||||||||||||  | |||  ||  |||||||||||||||||    
T  15890972 gctcctcctcaacctaaaatgattgtacaccaacaccttcgaatcctttttttta--cggaaccatcacattcgattccgtaccatgtcatagacgattt 15890875  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    | |||| |||||||||||||||    
T  15890874 tgctttcttcttctcatcaccc 15890853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 563
Target Start/End: Complemental strand, 16413274 - 16413162
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| | |||||||||| ||||        | ||||||||||||  | |||  |||||||||||||| ||||||    
T  16413274 gctcctcctcaacctcgaatgattgtacactgacaccttcgaatccttcttttttac-ggaaccatcacattcgattccgtgtcatgtcataggcgattt 16413176  T
Q  550 ttctttgttcttct 563  Q
    |||||| |||||||    
T  16413175 ttctttcttcttct 16413162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 33404960 - 33405007
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| |||||||||||||| ||||||| ||| ||||    
T  33404960 gctcctcctcaacctcgactgattgtacaccagcacctttgaatcctt 33405007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 39798985 - 39798941
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacc 494  Q
    |||||||||||||| | | ||||||||||| ||||||||||||||    
T  39798985 gctcctcctcaaccgcgagtgattgtacactggcaccttcgaacc 39798941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 49397855 - 49397975
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||| ||||||||||| |||||||||||||||||||| ||  ||||||        | ||||||||||||||||||| |||| |||||||||||||||||    
T  49397855 gctcatcctcaacctcgactgattgtacaccggcaccatcagacccttttttttttc-ggaaccatcacaaacaattctgtgccatgtcatagacgattt 49397953  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  49397954 ttctttgttcttctcatcaccc 49397975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 451 - 571
Target Start/End: Original strand, 13974136 - 13974256
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttt 550  Q
    ||||||||||||||  | ||||||||||||||||||||| |||||||         |||||||||||||||||||| ||||||||||||||  |||||||    
T  13974136 ctcctcctcaacctggagtgattgtacaccggcaccttcaaaccctttttttttttcggaaccatcacaaacaattttgtgtcatgtcataagcgatttt 13974235  T
Q  551 tctttgttcttctcatcaccc 571  Q
    | |||||||||||||||||||    
T  13974236 tatttgttcttctcatcaccc 13974256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 26634205 - 26634078
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt-annnnnnnc-----cggaaccatcacaaacaattatgtgtcatgtcataga 543  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |       |     | |||||||||| |||||||||||| ||||||||||     
T  26634205 gctcctcctcaacctcgactgattgtacaccggcaccttcgaacccttcatttttttctttttcagaaccatcactaacaattatgtgccatgtcatagg 26634106  T
Q  544 cgatttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||||||||    
T  26634105 cgatttttctttgttcttctcatcaccc 26634078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 450 - 569
Target Start/End: Original strand, 41803435 - 41803553
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||          |||||||||||||||||||   ||| ||||||||| ||||||    
T  41803435 gctcctcctcaacctcgactgattgtacaccggcaccttcgaaccctt-cttttttttggaaccatcacaaacaatttcttgttatgtcataggcgattt 41803533  T
Q  550 ttctttgttcttctcatcac 569  Q
    ||||||||||||||||||||    
T  41803534 ttctttgttcttctcatcac 41803553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 29437142 - 29437261
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    ||||||||||||| || | |||||||||||| ||||||||||||||||        |  ||||||||||||||||||  ||| |||||||||||||||||    
T  29437142 gctcctcctcaacttcgagtgattgtacaccagcaccttcgaaccctttttttttcc--gaaccatcacaaacaatttcgtgccatgtcatagacgattt 29437239  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  29437240 ttctttgttcttctcatcaccc 29437261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 48227720 - 48227840
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| |  ||||||||| ||||||||||||||||||        | ||||||||| ||||||||| |||| || ||||||||||||||    
T  48227720 gctcctcctcaacctcgagcgattgtacatcggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaattctgtgccacgtcatagacgattt 48227818  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  48227819 ttctttgttcttctcatcaccc 48227840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 49428548 - 49428668
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||        | ||||||||| |||||||||  ||| || ||||||| ||||||    
T  49428548 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaatttcgtgccacgtcataggcgattt 49428646  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  49428647 ttctttgttcttctcatcaccc 49428668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 51271012 - 51271132
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||||        | ||||||||| |||||||||  |||||| ||||||| ||||||    
T  51271012 gctcctcctcaacctcgagtgaatgtacaccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaattccgtgtcacgtcataggcgattt 51271110  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  51271111 ttctttgttcttctcatcaccc 51271132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 451 - 571
Target Start/End: Complemental strand, 24363063 - 24362943
Alignment:
Q  451 ctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttt 550  Q
    ||||||||||||| | ||||||||||||||||||||||||||| |||         ||||||||||||||||||||   ||||||||||||| |||||||    
T  24363063 ctcctcctcaaccccgactgattgtacaccggcaccttcgaacgcttcttttttttcggaaccatcacaaacaattccatgtcatgtcataggcgatttt 24362964  T
Q  551 tctttgttcttctcatcaccc 571  Q
    ||||| ||||| |||||||||    
T  24362963 tctttcttcttgtcatcaccc 24362943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 36911089 - 36911211
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-cggaaccatcacaaacaattatgtgtcatgtcatagacgatt 548  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||          ||||||||||||||||||||  ||| |||||||||   ||||    
T  36911089 gctccttctcaacctcgactgattgtacaccggcaccttcgaacccttctttttttttcggaaccatcacaaacaatttcgtgccatgtcatatgtgatt 36911188  T
Q  549 tttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||    
T  36911189 tttctttgttcttctcatcaccc 36911211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 46142452 - 46142326
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-----cggaaccatcacaaacaattatgtgtcatgtcatagac 544  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||              || ||||||||||||||||| |||| ||| |||||| |    
T  46142452 gctcctcctcaacctgaactgattgtacaccggcaccttcgaacccttttttttttttttttcgaaaccatcacaaacaattttgtgccatatcataggc 46142353  T
Q  545 gatttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||||||    
T  46142352 gatttttctttgttcttctcatcaccc 46142326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 14172757 - 14172634
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccct--tannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  |          ||||| |||||||||||||||||| ||||||||||  |||    
T  14172757 gctcctcctcaacctcgactgattgtacaccggcaccttcgaacccttcttgttttttttggaactatcacaaacaattatgtgccatgtcataggtgat 14172658  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    |||| ||||||| |||||||||||    
T  14172657 ttttttttgttcctctcatcaccc 14172634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 6436989 - 6437053
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||||||||||    
T  6436989 cggaaccatcacaaacaattccgtgccatgtcataggcgatttttctttgttcttctcatcaccc 6437053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 35525194 - 35525075
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||||||||||||| ||||||||        | ||||||||||||||||||   || |||||||||| || |||    
T  35525194 gctcctcctcaacctcgagtgattgtacaccggcaccttcaaacccttatttttt--cagaaccatcacaaacaattccatgccatgtcataggcggttt 35525097  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||| ||||||||||||||||||    
T  35525096 ttcgttgttcttctcatcaccc 35525075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 49925446 - 49925326
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    ||||||| |||||||| | ||||||||||||||||| |||||||| ||        | ||||||||||||||||||| |||| || |||||||  |||||    
T  49925446 gctcctcgtcaacctcgagtgattgtacaccggcacattcgaacctttctttttttc-ggaaccatcacaaacaattttgtgccacgtcataggtgattt 49925348  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  49925347 ttctttgttcttctcatcaccc 49925326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 448 - 571
Target Start/End: Complemental strand, 27485722 - 27485598
Alignment:
Q  448 ctgctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc-cggaaccatcacaaacaattatgtgtcatgtcatagacga 546  Q
    |||||||||||||||||| | ||||||||||||   ||||||||||||||          |||||||||| |||||||||| ||| || ||||||| |||    
T  27485722 ctgctcctcctcaacctcgagtgattgtacacctataccttcgaacccttctttttttttcggaaccatcgcaaacaattacgtgccacgtcataggcga 27485623  T
Q  547 tttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||||    
T  27485622 tttttctttgttcttctcatcaccc 27485598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 42570788 - 42570665
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnc--cggaaccatcacaaacaattatgtgtcatgtcatagacgat 547  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| |||           ||||||||||||||||||||  ||| |||||||||| | ||    
T  42570788 gctcctcctcaacctcgactgattgtacgccggcaccttcgaactctttttttttttttcggaaccatcacaaacaattccgtgccatgtcataggcaat 42570689  T
Q  548 ttttctttgttcttctcatcaccc 571  Q
    ||||||||||||| ||||||||||    
T  42570688 ttttctttgttctactcatcaccc 42570665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 570
Target Start/End: Complemental strand, 44336907 - 44336796
Alignment:
Q  458 tcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgt 557  Q
    |||||||| | |||||||||||||||||||||||||||||        | ||||||||| |||||||||  ||| || ||||||| ||||||||||||||    
T  44336907 tcaacctcgagtgattgtacaccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaattccgtgccacgtcataggcgatttttctttgt 44336809  T
Q  558 tcttctcatcacc 570  Q
    |||||||||||||    
T  44336808 tcttctcatcacc 44336796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 507 - 569
Target Start/End: Original strand, 13284687 - 13284749
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcac 569  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||| |||||||||||||    
T  13284687 cggaaccatcacaaacaattccgtgtcatgtcataggcgatttttctttcttcttctcatcac 13284749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 18974591 - 18974655
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||| ||| |||||||||| | ||||||||||| ||||||||||||||    
T  18974591 cggaaccatcacaaacaattacgtgccatgtcataggcaatttttctttgatcttctcatcaccc 18974655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 26494728 - 26494792
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||| ||||||||||||||  ||||||||| |||| ||||||||||||||||||||||||||||    
T  26494728 cggaatcatcacaaacaatttcgtgtcatgtaataggcgatttttctttgttcttctcatcaccc 26494792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 29761177 - 29761059
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||         |||||||||| |||||||||  ||| || ||||||| ||||||    
T  29761177 gctcctcctcaacctcgagtgattgtacac-ggcaccttcgaacccttctttttt--cggaaccatcgcaaacaattccgtgccacgtcataggcgattt 29761081  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||| |||||||||||||||    
T  29761080 ttctttattcttctcatcaccc 29761059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 570
Target Start/End: Complemental strand, 13634360 - 13634297
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcacc 570  Q
    |||||||||| |||||||||   || || |||||||| ||||||||||| ||||||||||||||    
T  13634360 cggaaccatcgcaaacaattccatgccacgtcatagaagatttttcttttttcttctcatcacc 13634297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 493
Target Start/End: Original strand, 26494667 - 26494710
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaac 493  Q
    ||||||||||||| || |||||||||||||| ||||||||||||    
T  26494667 gctcctcctcaacttcgactgattgtacacctgcaccttcgaac 26494710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 2985 - 3105
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||        | ||||||||| |||||||||  ||| || ||||||| ||||||    
T  2985 gctcctcctcaacctcgagtgattgtactccggcaccttcgaacccttctttttttc-ggaaccatcgcaaacaatttcgtgccacgtcataggcgattt 3083  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||||    
T  3084 ttctttgttcttctcatcaccc 3105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 506 - 571
Target Start/End: Complemental strand, 35020192 - 35020127
Alignment:
Q  506 ccggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||||||||||||||||||| || |||||||  |||||||||||||||||||||||||||    
T  35020192 ccggaaccatcacaaacaattatgtgccacgtcataggtgatttttctttgttcttctcatcaccc 35020127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 32026623 - 32026503
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||         | ||||||| ||||| ||||  ||| |||||||||| ||||||    
T  32026623 gctcctcctcaacctcgactaattgtacaccggcaccttcgaaccctt-ctttttttcagaaccattacaaataatttcgtgccatgtcataggcgattt 32026525  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||||||||| |||||||||    
T  32026524 ttctttgttcttttcatcaccc 32026503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 32036682 - 32036562
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||         | ||||||| ||||| ||||  ||| |||||||||| ||||||    
T  32036682 gctcctcctcaacctcgactaattgtacaccggcaccttcgaaccctt-ctttttttcagaaccattacaaataatttcgtgccatgtcataggcgattt 32036584  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||||||||| |||||||||    
T  32036583 ttctttgttcttttcatcaccc 32036562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 34802183 - 34802056
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnn------ccggaaccatcacaaacaattatgtgtcatgtcataga 543  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||              ||||||||||||||||||||| | || ||||||||||     
T  34802183 gctcctcctcaacctcgactgattgtacaccggcacctttgaacccttttttttttttttttccggaaccatcacaaacaattctttgccatgtcatagg 34802084  T
Q  544 cgatttttctttgttcttctcatcaccc 571  Q
     || ||||||||||||||||||||||||    
T  34802083 tgaattttctttgttcttctcatcaccc 34802056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 569
Target Start/End: Original strand, 13404019 - 13404137
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||          | |||||| | ||||||||  ||| |||||||||| ||||||    
T  13404019 gctcctcctcaacctcgactgattgtacatcggcaccttcgaaccctt-cttttttttgaaaccataaaaaacaattccgtgccatgtcataggcgattt 13404117  T
Q  550 ttctttgttcttctcatcac 569  Q
    ||||||||||||||||||||    
T  13404118 ttctttgttcttctcatcac 13404137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 507 - 571
Target Start/End: Complemental strand, 13616837 - 13616773
Alignment:
Q  507 cggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    ||||||||||||||||||||  ||| ||  |||||| ||||||||||||||||||||||||||||    
T  13616837 cggaaccatcacaaacaattccgtgccacatcataggcgatttttctttgttcttctcatcaccc 13616773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 6206575 - 6206622
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  6206575 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 6206622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 11693542 - 11693589
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  11693542 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 11693589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 27641265 - 27641312
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  27641265 gctcctcctcaacctcgagtgattgtacaccggcaccttcgaaccctt 27641312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 29067683 - 29067803
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||| ||||||||||| | |||||||||||||  ||||||||||||||        | ||||||||| |||||||||  ||| ||  |||||| ||||||    
T  29067683 gctcatcctcaacctcgagtgattgtacaccgaaaccttcgaacccttctttttttc-ggaaccatcgcaaacaattccgtgccacatcataggcgattt 29067781  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||| ||||||    
T  29067782 ttctttgttcttctcgtcaccc 29067803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 29109272 - 29109392
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||| ||||||||||| | |||||||||||||  ||||||||||||||        | ||||||||| |||||||||  ||| ||  |||||| ||||||    
T  29109272 gctcatcctcaacctcgagtgattgtacaccgaaaccttcgaacccttctttttttc-ggaaccatcgcaaacaattccgtgccacatcataggcgattt 29109370  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    ||||||||||||||| ||||||    
T  29109371 ttctttgttcttctcgtcaccc 29109392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 13616899 - 13616852
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | ||||||||||||| ||||| |||||||||    
T  13616899 gctcctcctcaacctcgagtgattgtacaccgacacctacgaaccctt 13616852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 32691709 - 32691662
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||||| | ||||||||| | |||||||||||||||    
T  32691709 gctcctcctcaacctcaagtaattgtacactgacaccttcgaaccctt 32691662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 509 - 571
Target Start/End: Complemental strand, 17025 - 16963
Alignment:
Q  509 gaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttgttcttctcatcaccc 571  Q
    |||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  17025 gaaccatcactaacaatttcgtgccatgtcatagacgatttttctttgttcttctcatcaccc 16963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 571
Target Start/End: Original strand, 1545 - 1665
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaacccttannnnnnnccggaaccatcacaaacaattatgtgtcatgtcatagacgattt 549  Q
    |||||||||||||||| | ||||| ||||||||||||||| || ||||        | | |||||||||||||||||  ||| |||||||||| ||||||    
T  1545 gctcctcctcaacctcgattgattatacaccggcaccttcaaatccttctattttacag-aaccatcacaaacaatttcgtgccatgtcataggcgattt 1643  T
Q  550 ttctttgttcttctcatcaccc 571  Q
    |||||| || ||||||||||||    
T  1644 ttctttcttgttctcatcaccc 1665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 510 - 571
Target Start/End: Complemental strand, 4497 - 4435
Alignment:
Q  510 aaccatcacaaacaattatgtgtcatgtcatagacgatttttc-tttgttcttctcatcaccc 571  Q
    |||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||    
T  4497 aaccatcacaaacaatttcgtgccatgtcataggcgatttttcttttgttcttctcatcaccc 4435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 4555 - 4515
Alignment:
Q  454 ctcctcaacctcaactgattgtacaccggcaccttcgaacc 494  Q
    |||||||||||  |||||||||||||||||||||||| |||    
T  4555 ctcctcaacctggactgattgtacaccggcaccttcggacc 4515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 5842 - 5795
Alignment:
Q  450 gctcctcctcaacctcaactgattgtacaccggcaccttcgaaccctt 497  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||    
T  5842 gctcctcctcaacctcgagtgattgtacactggcaccttcgaaccctt 5795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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