View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13731_low_4 (Length: 523)
Name: NF13731_low_4
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13731_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 47799900 - 47800415
Alignment:
| Q |
1 |
ttgtggtgccattgcacttgaaggcaactatattggttatagataaagttaaatgaggtgagccataannnnnnnnctagtgcaagtagttatgcatttt |
100 |
Q |
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| T |
47799900 |
ttgtggtgccattgcacttgaaggcaactatattggttatagataaagttaaatgaggtgagccatatttttttttctagtgcaagtagttatgcatttt |
47799999 |
T |
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| Q |
101 |
acattttgaagtatatgatgcacttctaatattactactgctgtaggctcaaaaattcagtgcaaattcaactcactcatcaaacaaaattctaatggtt |
200 |
Q |
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| T |
47800000 |
acattttgaagtatatgatgcacttctaatattactactgctgtaggctcaaaaattcagtgcaaattcaactcactcatcaaacaaaattctaatggtt |
47800099 |
T |
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| Q |
201 |
tgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttacctaagt |
300 |
Q |
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| T |
47800100 |
tgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgccttt-caaaatgcaatctaagacaagcaataatttacctaagt |
47800198 |
T |
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| Q |
301 |
taaggacttttcttacacgaatcagaggtatagagatgattgtgtagtggatggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcag |
400 |
Q |
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| T |
47800199 |
taaggacttttcttacacgaatcagaggtatagagatgattgtgtagtggatggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcag |
47800298 |
T |
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| Q |
401 |
gtctgaatctatttgtttatttgataaaattcaaaggttaaccgccgagaaggagttaactatatgttatcatagttatgagcgacaaccttgaaacaac |
500 |
Q |
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| T |
47800299 |
gtctgaatctatttgtttatttgataaaattcaaaggttaaccgccgagaaggagttaactatatgttatcatagttatgagcgacagccttgaaacaac |
47800398 |
T |
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| Q |
501 |
tgtatatgatgatgtcc |
517 |
Q |
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| T |
47800399 |
tgtatatgatgatgtcc |
47800415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 352 - 442
Target Start/End: Original strand, 48755583 - 48755673
Alignment:
| Q |
352 |
tggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcaggtctgaatctatttgtttatttgataaaattcaaaggttaac |
442 |
Q |
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| T |
48755583 |
tggaatcaagagataaaggtaggaaggtctgaatcttatctatttgcaggtctgaaactatttacttgtttgataaaatgcaaaagttaac |
48755673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 340
Target Start/End: Complemental strand, 11326975 - 11326829
Alignment:
| Q |
195 |
atggtttgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttac |
294 |
Q |
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| T |
11326975 |
atggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcaaaccttcacgatatgcaatctaagagaatcaatgattaac |
11326876 |
T |
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| Q |
295 |
ctaagttaa-ggacttttcttacacgaatcagaggtatagagatgat |
340 |
Q |
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| T |
11326875 |
ctaaggtaaaggacatttctctcatgaatcagaggtatagatatgat |
11326829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 340
Target Start/End: Complemental strand, 11484996 - 11484850
Alignment:
| Q |
195 |
atggtttgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttac |
294 |
Q |
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| T |
11484996 |
atggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcaaaccttcacgatatgcaatctaagagaatcaatgattaac |
11484897 |
T |
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| Q |
295 |
ctaagttaa-ggacttttcttacacgaatcagaggtatagagatgat |
340 |
Q |
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| T |
11484896 |
ctaaggtaaaggacatttctctcatgaatcagaggtatagatatgat |
11484850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 28730916 - 28730988
Alignment:
| Q |
242 |
ctattattcctcgtgcctttacaaaatgcaatctaagac-aagcaataatttacctaagttaaggacttttct |
313 |
Q |
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| T |
28730916 |
ctatgattcctcatgcctttacaaaatgcaatccaagacaaagcaatgatttacctaagttaaggacatttct |
28730988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 28735607 - 28735679
Alignment:
| Q |
242 |
ctattattcctcgtgcctttacaaaatgcaatctaagac-aagcaataatttacctaagttaaggacttttct |
313 |
Q |
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|||| ||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
28735607 |
ctatgattcctcatgcctttacaaaatgcaatccaagacaaagcaatgatttacctaagttaaggacatttct |
28735679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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