View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13731_low_5 (Length: 511)

Name: NF13731_low_5
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13731_low_5
NF13731_low_5
[»] chr5 (3 HSPs)
chr5 (1-494)||(10322051-10322548)
chr5 (13-101)||(8123394-8123482)
chr5 (15-101)||(671328-671414)
[»] chr7 (2 HSPs)
chr7 (13-101)||(42513258-42513346)
chr7 (13-102)||(38572407-38572496)
[»] chr2 (1 HSPs)
chr2 (11-101)||(4472702-4472792)
[»] chr1 (2 HSPs)
chr1 (12-101)||(18584081-18584170)
chr1 (2-101)||(21076160-21076259)
[»] chr6 (4 HSPs)
chr6 (12-101)||(13886454-13886543)
chr6 (13-102)||(7415504-7415593)
chr6 (12-56)||(4834628-4834672)
chr6 (45-101)||(33242716-33242771)
[»] chr4 (3 HSPs)
chr4 (20-101)||(36050519-36050600)
chr4 (20-101)||(36053778-36053859)
chr4 (46-101)||(9236784-9236839)
[»] chr3 (2 HSPs)
chr3 (12-101)||(30911921-30912010)
chr3 (18-101)||(36326368-36326451)
[»] scaffold1064 (1 HSPs)
scaffold1064 (29-101)||(358-430)


Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 10322051 - 10322548
Alignment:
Q  1 taaaatagatattagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  10322051 taaaatagatattagatccttatagattaaagtgagtcatacttacttctaaaattaggtaagtcaccgtattagtgctcattattatgactatcctatc 10322150  T
Q  101 accccatgtcgccacttctcttccaatgatgcaaaatctccaattcatgatcgatattcggattgaaaacaacctcagaagcatcgacatagccacacta 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10322151 accccatgtcgccacttctcttccgatgatgcaaaatctccaattcatgaacgatattcggattgaaaacaacttcagaagcatcgacatagccacacta 10322250  T
Q  201 atatataattgatatgaccttaattcttaattaattaaatattcaaagtttaatttgaccgctaagatacaagatcaacaccacactaatgattttgtta 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10322251 atatataattgatatgaccttaattattaattaattaaatattcaaagtttaatttgaccgctaagatacaagatcaacaccacactaatgattttgtta 10322350  T
Q  301 ttttctagttagttggtaaagtatcaccaatacaatatgttatcaaagaaagtatcacaaataggaatatataccatgcacataatctccataagtgaac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10322351 ttttctagttagttggtaaagtatcaccaatacaatatgttatcaaagaaagtatcacaaataggaatatataccatgcacataatctccataagtgaac 10322450  T
Q  401 cgaaagatcatgtgaattaaagagagattcagggaattgagaagg----attaaagctagcttctttttcttcttgctttctcttttattgagctgat 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10322451 cgaaagatcatgtgaattaaagagagattcagggaattgagaaggattaattaaagctagcttctttttcttcttgctttctcttttattgagctgat 10322548  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 8123482 - 8123394
Alignment:
Q  13 tagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    |||||||||||||||||| || ||||||| | ||||||| |||||| | | |||||| |||||||||| ||||||||| ||||||||||    
T  8123482 tagatccttctagattaaggtcagtcataataacttctagaactagatgagtcaccagattagtgctccttattctaaatatcctatca 8123394  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 671414 - 671328
Alignment:
Q  15 gatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    |||||||||||||||| |||||||||| | || |||| || |||   | |||| |||||| ||||| ||||||||| ||||||||||    
T  671414 gatccttctagattaaggtgagtcataataacatctagaattagccgagtcactatattaatgctccttattctaaatatcctatca 671328  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 42513258 - 42513346
Alignment:
Q  13 tagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    |||||||||||||||||| |||||||||| | ||||||| |||||| | | |||||| |||||||||| ||||||||| ||||||||||    
T  42513258 tagatccttctagattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatca 42513346  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 38572407 - 38572496
Alignment:
Q  13 tagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatcac 102  Q
    ||||||||| |||||||| |||||||||| | ||||||| |||||| | | ||| || |||||| ||||||||||||| ||| |||||||    
T  38572407 tagatccttttagattaaggtgagtcataataacttctagaactagctgagtcagcacattagtactcattattctaaatatactatcac 38572496  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 4472792 - 4472702
Alignment:
Q  11 attagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    |||||||||||||||||||| |||| ||||  || |||||| |||||||| | ||||||||| | ||||| ||||| ||||||||||||||    
T  4472792 attagatccttctagattaaggtgaatcatctttgcttctagaactaggtgagtcaccatataaatgctccttattttaactatcctatca 4472702  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 18584081 - 18584170
Alignment:
Q  12 ttagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    ||||||||||||||||||| |||||||||| | |||| || |||||| |||  ||||| |||| ||||| ||||||||| ||||||||||    
T  18584081 ttagatccttctagattaaggtgagtcataataacttttataactagctaagccaccacattaatgctccttattctaaatatcctatca 18584170  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 21076160 - 21076259
Alignment:
Q  2 aaaatagatattagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    |||||| | ||||||||||| || ||||| |||| ||||| || |||||| |||||||| | |||||| |||||| ||| |||||||||| |||||||||    
T  21076160 aaaatacagattagatccttttaaattaaggtgaatcatatttgcttctagaactaggtgagtcaccacattagtactccttattctaaccatcctatca 21076259  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 13886543 - 13886454
Alignment:
Q  12 ttagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    ||||||| ||||||||||| |||||||||| | | || || ||||||   | |||||| |||||||||| ||||||||||||||||||||    
T  13886543 ttagatctttctagattaaggtgagtcataataatttatagaactagcagagtcaccacattagtgctccttattctaactatcctatca 13886454  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 7415593 - 7415504
Alignment:
Q  13 tagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatcac 102  Q
    |||||||||||| |||||  ||||||||| |   ||||| |||||| | | |||||| |||||| ||||||||||||| || ||||||||    
T  7415593 tagatccttctaaattaagatgagtcataatattttctagaactagctgagtcaccacattagtactcattattctaagtaccctatcac 7415504  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 4834672 - 4834628
Alignment:
Q  12 ttagatccttctagattaaagtgagtcatacttacttctaaaact 56  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||    
T  4834672 ttagatccttctagattaaggtgagtcataataacttctagaact 4834628  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 33242771 - 33242716
Alignment:
Q  45 acttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    ||||||| |||||| | | ||||||||||||||||| ||||||||| ||||||||||    
T  33242771 acttctagaactagctgagtcaccatattagtgctccttattctaa-tatcctatca 33242716  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 36050600 - 36050519
Alignment:
Q  20 ttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    |||||||||||  |||||||||||  |||||| |||||||  | |||||| |||||| ||||||||||||| ||||||||||    
T  36050600 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatca 36050519  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 36053859 - 36053778
Alignment:
Q  20 ttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    |||||||||||  |||||||||||  |||||| |||||||  | |||||| |||||| ||||||||||||| ||||||||||    
T  36053859 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatca 36053778  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 9236839 - 9236784
Alignment:
Q  46 cttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    ||||||||||| ||||| |||||| || ||||||||||||| ||| ||||||||||    
T  9236839 cttctaaaacttggtaagtcaccacatgagtgctcattattttaattatcctatca 9236784  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 30912010 - 30911921
Alignment:
Q  12 ttagatccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    ||||||||||||||||||| |||||||||| | ||||||| |||||    | ||| || |||||| ||||||||||||| ||||||||||    
T  30912010 ttagatccttctagattaaggtgagtcataataacttctagaactaaccgagtcatcacattagtactcattattctaagtatcctatca 30911921  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 36326451 - 36326368
Alignment:
Q  18 ccttctagattaaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    ||||||||||||| |||||||||| | ||||||| |||||| | | |||||| |||| | ||||||||||||| ||| ||||||    
T  36326451 ccttctagattaatgtgagtcataataacttctagaactagatgagtcaccacattaatactcattattctaaatatgctatca 36326368  T

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Target: scaffold1064 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 430 - 358
Alignment:
Q  29 aaagtgagtcatacttacttctaaaactaggtaaatcaccatattagtgctcattattctaactatcctatca 101  Q
    ||||||||||||  || ||||||||||| ||||| |||||| || |||| |||||||| ||| ||||||||||    
T  430 aaagtgagtcatttttgcttctaaaacttggtaagtcaccacatgagtgatcattattttaattatcctatca 358  T

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