View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13731_low_6 (Length: 459)
Name: NF13731_low_6
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13731_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 6822150 - 6821725
Alignment:
| Q |
19 |
ctcctggtttacttccctctcccttatcaaagaaaagaacagacaaggggattcctttctttctgaatgcttgtgcggagtttgcatcaagaccatcatc |
118 |
Q |
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| T |
6822150 |
ctcctggtttacttccctctcccttatcaaagaaaagaacagacaaggggattcctttctttctgaatgcttgtgcggagtttgcatcaagaccatcatc |
6822051 |
T |
|
| Q |
119 |
atcaaaattataggcaaaccgctgatctaaatgcataccaaaataccgactgtggtttgttctgctgttgttttgcaagataatttctctgagcatactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
6822050 |
atcaaaattataggcaaaccgctgatctaaatgcataccaaaataccgactgtggtttgttctgctattgttttgcaagataatttctttgagcatactt |
6821951 |
T |
|
| Q |
219 |
ggaagacaacatgtcttaattttgccattgggctttagtgctacaacttgaatcatgctacggtctctcaactcttctaggtaactttctgcagtctctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6821950 |
ggaagacaacatgtcttaattttgccattgggctttagtgctacaacttgaatcatgctacggtctctcaactcttctaggtaactttctgcagtctctt |
6821851 |
T |
|
| Q |
319 |
cgggtgtgttctgatcgttctgtacttgcaccaatccttctccaacccatagattgactaacctccttgccgagatttcatagtctaatggaaattttgt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6821850 |
cgggtgtgttctgatcgttctgtacttgcaccaatccttctccaacccatagattgactaatctccttgccgagatttcatagtctaatggaaattttgt |
6821751 |
T |
|
| Q |
419 |
aaagtaatagagacagttcctcacag |
444 |
Q |
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| T |
6821750 |
aaagtaatagagacagttcctcacag |
6821725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 7334450 - 7334031
Alignment:
| Q |
19 |
ctcctggtttacttccctctcccttatcaaagaaaagaacagacaaggggattcctttctttctgaatgcttgtgcggagtttgcatcaagaccatcatc |
118 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||||||||||||||| ||| |||||||||| ||||| ||||| || |||||| ||| ||| |||| ||| |
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| T |
7334450 |
ctcctggtttacatccctctcgcttgtcaaagaaaagaacagacaggggagttcctttcttgctgaaagcttgggccgagttttcattaaggccatgatc |
7334351 |
T |
|
| Q |
119 |
atcaaaattataggcaaaccgctgatctaaatgcataccaaaataccgactgtggtttgttctgctgttgttttgcaagataatttctctgagcatactt |
218 |
Q |
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| ||||| ||||| || ||| | |||||||| |||| | |||||||| ||| |||||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
7334350 |
gtaaaaatgataggaaattcgccgctctaaatgtgtaccccagtaccgactttggcttgttctgttgttattttgcaagatgatttctctgagcatactc |
7334251 |
T |
|
| Q |
219 |
ggaagacaacatgtcttaattttgccattgggctttagtgctacaacttgaatcatgctacggtctctcaactcttctaggtaactttctgcagtctctt |
318 |
Q |
| |
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|| || | ||||||||||| || ||||| ||||||||| || |||||||||||| | | |||| ||||||||||||| ||||| |||||||| |||| |
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| T |
7334250 |
ggcaggcggcatgtcttaatctttccatttccctttagtgccactacttgaatcatgttgctgtctatcaactcttctagataactctctgcagtgtctt |
7334151 |
T |
|
| Q |
319 |
cgggtgtgttctgatcgttctgtacttgcaccaatccttctccaacccatagattgactaacctccttgccgagatttcatagtctaatggaaattttgt |
418 |
Q |
| |
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| |||| ||| |||| | | ||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| || ||||| |
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| T |
7334150 |
caggtg---tctttccgttgttttgttgtaccaatccttctccaacccatagattgactaatctccttgctgggatttcatagtctaatgggaagtttgt |
7334054 |
T |
|
| Q |
419 |
aaagtaatagagacagttcctca |
441 |
Q |
| |
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|||| |||||||||||| ||||| |
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|
| T |
7334053 |
aaagcaatagagacagtccctca |
7334031 |
T |
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