View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13731_low_7 (Length: 434)

Name: NF13731_low_7
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13731_low_7
NF13731_low_7
[»] chr5 (4 HSPs)
chr5 (318-434)||(9511685-9511805)
chr5 (17-114)||(9511385-9511482)
chr5 (332-434)||(11335462-11335562)
chr5 (343-417)||(24136711-24136784)
[»] chr4 (2 HSPs)
chr4 (318-434)||(54147527-54147644)
chr4 (353-411)||(16870562-16870620)
[»] chr7 (4 HSPs)
chr7 (320-434)||(21813729-21813847)
chr7 (320-424)||(6530511-6530619)
chr7 (353-417)||(44338200-44338264)
chr7 (353-411)||(46963921-46963979)
[»] chr2 (3 HSPs)
chr2 (361-417)||(1173675-1173731)
chr2 (353-411)||(8986124-8986182)
chr2 (353-403)||(38584277-38584327)
[»] chr3 (2 HSPs)
chr3 (353-434)||(50295473-50295554)
chr3 (353-413)||(46692123-46692182)
[»] chr8 (2 HSPs)
chr8 (353-417)||(20241877-20241941)
chr8 (353-417)||(20251126-20251190)
[»] chr6 (3 HSPs)
chr6 (366-420)||(10741458-10741512)
chr6 (364-434)||(28063748-28063813)
chr6 (353-417)||(21861964-21862028)
[»] chr1 (1 HSPs)
chr1 (371-419)||(19825175-19825223)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 318 - 434
Target Start/End: Original strand, 9511685 - 9511805
Alignment:
Q  318 catggttcgtgtggttcagttcggtttgatttggatt----tggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttg 413  Q
    |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9511685 catggttcgtgtggttcagttcggtttgatttggattcgcttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttg 9511784  T
Q  414 tttggtgagtcgagtgctcac 434  Q
    |||||||||||||||||||||    
T  9511785 tttggtgagtcgagtgctcac 9511805  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 9511385 - 9511482
Alignment:
Q  17 atatctttgtatattgtatgacatatttccggtagctcctcttttattggttgactcctctctatttagtttttgcttctcatttggttgttcgtctc 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9511385 atatctttgtatattttatgacatatttccggtagctcctcttttgttggttgactcctctctatttagttgttgcttctcatttggttgttcgtctc 9511482  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 434
Target Start/End: Complemental strand, 11335562 - 11335462
Alignment:
Q  332 ttcagttcggtttgatttggatttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggtgagtcgagtgct 431  Q
    ||||||| | |||||||| | ||||||| |||||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||| | ||| ||||||    
T  11335562 ttcagtttgatttgatttcg-tttggttcaatttgtttggttgtt-ggtgagtcaagatagtgctcacaattggtttgtttgtttggcgggtcaagtgct 11335465  T
Q  432 cac 434  Q
    |||    
T  11335464 cac 11335462  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 24136711 - 24136784
Alignment:
Q  343 ttgatttggatttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 417  Q
    ||||||||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| |||||    
T  24136711 ttgatttgg-tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcgtttg 24136784  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 318 - 434
Target Start/End: Original strand, 54147527 - 54147644
Alignment:
Q  318 catggttcgtgtggttcagttcggtttgatttggatt-tggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgttt 416  Q
    |||||||||| |||||||||| |||||||||||||||    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  54147527 catggttcgtttggttcagtttggtttgatttggattcattttgaatttgtttggttgttaggtgagtcaagatagtcctcacaattggtttgtttgttt 54147626  T
Q  417 ggtgagtcgagtgctcac 434  Q
    |||  ||| |||||||||    
T  54147627 ggtaggtcaagtgctcac 54147644  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 16870562 - 16870620
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtt 411  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| |||||||    
T  16870562 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgtt 16870620  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 21813729 - 21813847
Alignment:
Q  320 tggttcgtgtggttcagttcggtttgatttggatttggttg----aatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtt 415  Q
    |||||||| || ||||||||||||||||||||||| |||||    ||||||||||||||||||| |||| |||||| ||||||||||| |||| ||||||    
T  21813729 tggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtt 21813828  T
Q  416 tggtgagtcgagtgctcac 434  Q
    ||||||||| |||||||||    
T  21813829 tggtgagtcaagtgctcac 21813847  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 6530511 - 6530619
Alignment:
Q  320 tggttcgtgtggttcagttcggtttgatttggatttg----gttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtt 415  Q
    |||||| | |||||| |||| |||||||||||||| |    ||| |||||||||| ||||| ||||||| ||||||||  |||||||| |||||| ||||    
T  6530511 tggttcatttggttccgttcagtttgatttggattcgttttgttcaatttgtttgattgttgggtgagtcaagatagtattcacaattggtttgtctgtt 6530610  T
Q  416 tggtgagtc 424  Q
    |||||||||    
T  6530611 tggtgagtc 6530619  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 44338200 - 44338264
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 417  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| |||||    
T  44338200 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttg 44338264  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Complemental strand, 46963979 - 46963921
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtt 411  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| |||||||    
T  46963979 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgtt 46963921  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 1173731 - 1173675
Alignment:
Q  361 aatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 417  Q
    |||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||    
T  1173731 aatttgtttggttgttaggtgagtcaagatagttctcaaaattggtttgtttgtttg 1173675  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 8986124 - 8986182
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtt 411  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| |||||||    
T  8986124 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgtt 8986182  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 38584327 - 38584277
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaatt 403  Q
    ||||||| |||||||||||||||| ||||||| || ||||| |||||||||    
T  38584327 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaatt 38584277  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 434
Target Start/End: Original strand, 50295473 - 50295554
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggtgagtcgagtgctcac 434  Q
    ||||||| |||||||||||||||| | |||||| ||||||| | ||||||| | |||||||||| ||| ||| |||||||||    
T  50295473 tttggttcaatttgtttggttgttggatgagttgagatagtgcacacaatttgattgtttgtttagtgggtcaagtgctcac 50295554  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 46692182 - 46692123
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttg 413  Q
    |||||||||||| ||||||||||| ||||||||||  |||| ||||||||| | |||||||    
T  46692182 tttggttgaatt-gtttggttgttgggtgagttaatctagttctcacaatttggttgtttg 46692123  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 20241877 - 20241941
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 417  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| |||||    
T  20241877 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttg 20241941  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 20251190 - 20251126
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 417  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| |||||    
T  20251190 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttg 20251126  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 10741458 - 10741512
Alignment:
Q  366 gtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggtg 420  Q
    ||||| ||||| ||||||| ||||||||  |||||||| ||||||||||||||||    
T  10741458 gtttgtttgtttggtgagtcaagatagtgttcacaatttgtttgtttgtttggtg 10741512  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 28063813 - 28063748
Alignment:
Q  364 ttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggtgagtcgagtgctcac 434  Q
    ||||||||||||||||||||||||||| || ||||||     |||| ||||||| |||||||| |||||||    
T  28063813 ttgtttggttgttaggtgagttaagattgtgctcaca-----tttggttgtttgttgagtcgattgctcac 28063748  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 21861964 - 21862028
Alignment:
Q  353 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 417  Q
    ||||||| ||||| ||||||| ||  |||||| || ||||| ||||||||| |||||||||||||    
T  21861964 tttggttcaatttatttggtttttgagtgagtcaaaatagttctcacaattggtttgtttgtttg 21862028  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 19825223 - 19825175
Alignment:
Q  371 gttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggt 419  Q
    |||||| ||||||| |||||| | ||||||||| |||||||||||||||    
T  19825223 gttgtttggtgagtcaagataatgctcacaatttgtttgtttgtttggt 19825175  T

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