View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13731_low_9 (Length: 364)
Name: NF13731_low_9
Description: NF13731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13731_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 41 - 346
Target Start/End: Complemental strand, 33306945 - 33306640
Alignment:
| Q |
41 |
cctattcattataaataagcataagttcaatttggttaataaatcaagtatatgtaactatatttgtaacatgactaaactacaacattctttgttattt |
140 |
Q |
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| T |
33306945 |
cctattcattataaataagcataagttcaatttggttaataaatcaagtatatgtaactatctttgtaacatgactaaactacaacattctttgttattt |
33306846 |
T |
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| Q |
141 |
agatggttctattggtaaagccatccgcttcacgctggctgcctccttagccggtttgactgccgttgctgccgcctcgcattaccggcgagaaacatcc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
33306845 |
agatggttctattggtaaagccatccgcttcacgctggctgcctccttagccggtttgactgccgtggccaccgcctcgcattaccggcgacaaacatcc |
33306746 |
T |
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| Q |
241 |
aaggtgggagtagaccagaagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgtttt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33306745 |
aaggtgggagtagaccagaagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgtttt |
33306646 |
T |
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| Q |
341 |
accttt |
346 |
Q |
| |
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|||||| |
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| T |
33306645 |
accttt |
33306640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 33253533 - 33253455
Alignment:
| Q |
259 |
aagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgt |
337 |
Q |
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||||||||||| || || |||| || | ||||||||||||| |||||||| ||||| ||||| ||||||||||||||| |
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| T |
33253533 |
aagatcattcctcacgttgatagaacagaatctggtcgtttggaaaagatagaaaagttctcccactatgttggtatgt |
33253455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 33273705 - 33273627
Alignment:
| Q |
259 |
aagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgt |
337 |
Q |
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||||||||||| || || |||| || | ||||||||||||| |||||||| ||||| ||||| ||||||||||||||| |
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| T |
33273705 |
aagatcattcctcacgttgatagaacagaatctggtcgtttggaaaagatagaaaagttctcccactatgttggtatgt |
33273627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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