View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13732_high_10 (Length: 362)
Name: NF13732_high_10
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 1451101 - 1450761
Alignment:
| Q |
1 |
acacatatgtcaaatactgtgtgtctcaattatacaacaagatctcttacataggcttaaaacaatcaatnnnnnnngtacaggatatcatatccatatt |
100 |
Q |
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| T |
1451101 |
acacatatgtcaaatactgtgtgtctcaattatacaacaagatctcttatataggcttaaaacaatcaataaaaaaagtacaggatatcatatccatatt |
1451002 |
T |
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| Q |
101 |
tacacgatataatatctacctatcctatgcaataaatccatacactcaaaaa-ctatactaacaaattcaagaagtaatgcttaatcaaacatttaaaat |
199 |
Q |
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| T |
1451001 |
tacacgatataatatctacctatcctatgcaataaatccatgcactcaaaaaactatactaacaaattcaagaagtaatgcttaatcaaacatttaaaat |
1450902 |
T |
|
| Q |
200 |
gtcttgtctaatacaactgaactgaattatgtcaacaaagtagtcaatgacaacatatcaactactgactaatgaaaggctataacctgatcatccacca |
299 |
Q |
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| T |
1450901 |
gtcttgtctaatacaactgaactgaattatgtcaacaaagtagtcaatgacaacatatcaagtactgactaatgaaaggctataacctgatcatccacca |
1450802 |
T |
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| Q |
300 |
cagcgagagggtcttgttctataagacttggtacctaacag |
340 |
Q |
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| T |
1450801 |
cagcgagagggtcttgttctataagacttggtacctaacag |
1450761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 284
Target Start/End: Complemental strand, 52473984 - 52473849
Alignment:
| Q |
150 |
aaactatactaacaaattcaagaagtaatgcttaatcaaacatttaaaatgtcttgtctaatacaactgaactgaattatgtcaacaaagtagtcaatga |
249 |
Q |
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| T |
52473984 |
aaactatactaacaaattcaagaagtaatacttaatcaaaactttaaattgtcttgtctaatgcagctgaactaaattatg-cagaaaaccagtcaatgg |
52473886 |
T |
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| Q |
250 |
caacatatcaact--actgactaatgaaaggctataa |
284 |
Q |
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| T |
52473885 |
caagatgtcaactgcacagactaatgaaaagctataa |
52473849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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