View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13732_high_12 (Length: 345)
Name: NF13732_high_12
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 36828940 - 36829255
Alignment:
| Q |
19 |
gcttcaccactgattcaggttcttcctctctctaatttcatactaaaccctacactatcaactacacctttttcttccttaggttttcctcaaatttcac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36828940 |
gcttcaccactgattcaggttcttcctctctctaatttcatactaaaccctacactatcaactacaccttcttcttccttaggttttcctcaaatttcac |
36829039 |
T |
|
| Q |
119 |
ttctttccaataaccctagattcttctctcaacaaatcgctactcaaaacgaggatggcgctgttcatctcgaaaatgatgacgttcctgttcagaatga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36829040 |
ttctttccaataaccctagattcttctctcaacaaatcgctactcaaaacgaggatggtgctgttcatctcgaaaatgatgacgttcctgttcagaatga |
36829139 |
T |
|
| Q |
219 |
tgatggtaatgaaaacgttgttggagtagaagaggaagaacaggttcatcagattgatgatgaaaaattggagaaagttgtgttttttctgcagaatgaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
36829140 |
tgatggtaatgaaaacgttgttggagtagaagaggaagaacaggtttatcagtttgatgatgaaaaattggagaaagttgtattttttcttcagaacgaa |
36829239 |
T |
|
| Q |
319 |
gaagttagtgatgatg |
334 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36829240 |
gaagttagtgatgatg |
36829255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 20825029 - 20825079
Alignment:
| Q |
41 |
ttcctctctctaatttcatactaaaccctacactatcaactacaccttttt |
91 |
Q |
| |
|
||||||||||||||||||||| |||| | |||| ||||||||||| ||||| |
|
|
| T |
20825029 |
ttcctctctctaatttcataccaaacgccacacaatcaactacacattttt |
20825079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University