View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13732_high_7 (Length: 440)
Name: NF13732_high_7
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 42743659 - 42744074
Alignment:
| Q |
18 |
gaaagaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
42743659 |
gaaagaccctatggaaatactgctattgtgaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccatcacttattgcagcttca |
42743758 |
T |
|
| Q |
118 |
aaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743759 |
aaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
42743858 |
T |
|
| Q |
218 |
cattgccaaatacacttgcatttgcaacaaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttc |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743859 |
cattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttc |
42743958 |
T |
|
| Q |
318 |
atttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743959 |
atttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtat |
42744058 |
T |
|
| Q |
418 |
gagcatatagaataat |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42744059 |
gagcatatagaataat |
42744074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 42753018 - 42753433
Alignment:
| Q |
18 |
gaaagaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
42753018 |
gaaagaccctatggaaatactgctattgtgaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccatcacttattgcagcttca |
42753117 |
T |
|
| Q |
118 |
aaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753118 |
aaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
42753217 |
T |
|
| Q |
218 |
cattgccaaatacacttgcatttgcaacaaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttc |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753218 |
cattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttc |
42753317 |
T |
|
| Q |
318 |
atttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753318 |
atttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtat |
42753417 |
T |
|
| Q |
418 |
gagcatatagaataat |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42753418 |
gagcatatagaataat |
42753433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 42734851 - 42734443
Alignment:
| Q |
18 |
gaaagaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| || | || |||||||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
42734851 |
gaaagaccctatggaaatactgctatcgtgaaattcaacaggaaaatcaccactcaaagacactgaaagcacatcaacaccatcacttatggcagcttca |
42734752 |
T |
|
| Q |
118 |
aaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
217 |
Q |
| |
|
||||||||||||||||||||||| | ||| | | | ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42734751 |
aaaccagccaaaatatctgcatcataaca-cgaac--cccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttc |
42734655 |
T |
|
| Q |
218 |
cattgccaaatacacttgcatttgcaacaaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttc |
317 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
42734654 |
catagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttc |
42734555 |
T |
|
| Q |
318 |
atttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
42734554 |
atttgggtttctaataggaattggcactgccatatagcctttgtaaaaatatcttgcgccaataagcttcctacaaggatgtaattaaaattcaaaacag |
42734455 |
T |
|
| Q |
418 |
gagcatatagaa |
429 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42734454 |
gagcatatagaa |
42734443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 42717034 - 42717326
Alignment:
| Q |
18 |
gaaagaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42717034 |
gaaagaccctatggaaatactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaagcacgtcgacaccatcacttatggcagcttca |
42717133 |
T |
|
| Q |
118 |
aaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
217 |
Q |
| |
|
||||||||||||||||||||||| | |||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
42717134 |
aaaccagccaaaatatctgcatcataacatgaa---tcccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgc |
42717230 |
T |
|
| Q |
218 |
cattgccaaatacacttgcatttgcaacaaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatg |
313 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
42717231 |
catagccaaatacacttgcattagcaacaaaatttcctccggcagttgataaagtatgtgtaccatgaccatcaatgtcacgtgcactattaaatg |
42717326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 67 - 429
Target Start/End: Original strand, 42762692 - 42763044
Alignment:
| Q |
67 |
ctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaacct |
166 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||||| |
|
|
| T |
42762692 |
ctacccaaagacaccgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatccatc---ccaacaaacct |
42762788 |
T |
|
| Q |
167 |
tataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcatttgcaacaaaatttcctccagcagttga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
42762789 |
tataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcctccagcagttga |
42762888 |
T |
|
| Q |
267 |
taaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgttaaaa |
366 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||||| | | | ||||| | |||| |||| | ||||||| ||||||| |||| |
|
|
| T |
42762889 |
taaagtgtgtgaaccatgaccttcactatcccgtgcactatgaagcgatacatttttggctctataaggatt------tgccagaaagcctttaaaaaaa |
42762982 |
T |
|
| Q |
367 |
tatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgagcatatagaa |
429 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| |||||||||| || |||||||||||| |
|
|
| T |
42762983 |
tatcttgctccaataagctttctacaaaattgtaat-aaaattcaaaataggagcatatagaa |
42763044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 156 - 390
Target Start/End: Original strand, 42769667 - 42769895
Alignment:
| Q |
156 |
ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcatttgcaacaaaatttcct |
255 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42769667 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
42769766 |
T |
|
| Q |
256 |
ccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagc |
355 |
Q |
| |
|
|| || |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||| | | || || | |||||| ||||| |
|
|
| T |
42769767 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtggatttaccagca------tctgccaaatagc |
42769860 |
T |
|
| Q |
356 |
ctttgttaaaatatcttgctccaataagcttccta |
390 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| |
|
|
| T |
42769861 |
ctttgtaaaaatatcttgctccaattagcttccta |
42769895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 42717371 - 42717406
Alignment:
| Q |
355 |
cctttgttaaaatatcttgctccaataagcttccta |
390 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42717371 |
cctttgtaaaaatatcttgctccaataagcttccta |
42717406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 42769565 - 42769633
Alignment:
| Q |
69 |
acccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttcaaaaccagccaaaatatctgc |
137 |
Q |
| |
|
||||| |||| | |||| ||| || ||||||||| |||||||||||| |||||||||||||| ||||| |
|
|
| T |
42769565 |
acccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtctgc |
42769633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 23040815 - 23040409
Alignment:
| Q |
18 |
gaaagaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || || ||||| |||||||| ||||||||| |
|
|
| T |
23040815 |
gaaagaccctatggaaatactgctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagtacatcaacaccatcacttattgcagcttca |
23040716 |
T |
|
| Q |
118 |
aaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
23040715 |
aaaccagccaaaatatctgcatcatgacataaatccccccagcaaaccttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggc |
23040616 |
T |
|
| Q |
218 |
cattgccaaatacacttgcatttgcaacaaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttc |
317 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23040615 |
cattgccaaatacactcgcattagcaacgaaatttcctccaacagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgaatgtttc |
23040516 |
T |
|
| Q |
318 |
atttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtat |
417 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040515 |
atttgggtctctaataggaattggcattgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtat |
23040416 |
T |
|
| Q |
418 |
gagcata |
424 |
Q |
| |
|
||||||| |
|
|
| T |
23040415 |
gagcata |
23040409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 234
Target Start/End: Complemental strand, 42313973 - 42313818
Alignment:
| Q |
79 |
actgaaagcacgtcgacaccgtcacttatggcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaa |
178 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||||||||| || | |||||||||| || ||| | | |||||| || || |||||||||| |
|
|
| T |
42313973 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaa |
42313874 |
T |
|
| Q |
179 |
ctcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacactt |
234 |
Q |
| |
|
| | |||||||| || ||||| |||| || ||||| ||||| ||| | |||||| |
|
|
| T |
42313873 |
catgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactt |
42313818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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