View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13732_high_8 (Length: 438)
Name: NF13732_high_8
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Original strand, 39559125 - 39559547
Alignment:
| Q |
9 |
atgaataatggaaccaacactttacctgtaagcggcgggtttaaagctattctcgacaaacatttgcacttgattagctatatggaggagccaattttgc |
108 |
Q |
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| T |
39559125 |
atgaataatggaaccaacactttacatgtaagcggcgggtttaaagctattctcaacaaccatttgcacttgattagctatatggaggagccaattttgc |
39559224 |
T |
|
| Q |
109 |
cagatattcgagtactggtcaaatacctattcgttatgttacttggataaagtattgatagaatctccaaataaggtccacaaactccatggcatatttc |
208 |
Q |
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|| | ||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||| |
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| T |
39559225 |
catagattaaagtactggtcaaataccagttcgttatgatccttggataaagtattgatagaaactccaaataaggtcacccaactccatgacatatttc |
39559324 |
T |
|
| Q |
209 |
caatatcttcgttgctaaggttccattcaagccaaggcatgagacctatgctaaagaatttagctcaataatctagtttgatgattagagatcaaaatta |
308 |
Q |
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| T |
39559325 |
caatatcttcgttgctaaggttccattcaagccaaggcatgagacctatgctaaagaatttagctcaataatctagtttgatgattagagatcaaaatta |
39559424 |
T |
|
| Q |
309 |
tatcgcctcatcacaatctcttaagacacgcacaatagattcaagtccttcttagcaatgaagacaactaatgtcatcggtcatattgattttgtgtctc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
39559425 |
tatcgcctcatcacaatctcttaagacacgcacaatagattcaagtccttcttagcaatgaagacaactattgtcatcggtcatattgattttttgtctc |
39559524 |
T |
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| Q |
409 |
tcctcatttgtcataagtcttcc |
431 |
Q |
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| T |
39559525 |
tcctcatttgtcataagtcttcc |
39559547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 50439596 - 50439720
Alignment:
| Q |
204 |
atttccaatatcttcgttgctaaggttccattcaagccaaggcatgagacctatgctaaagaatttagctcaataatctagtttgatgattagagatcaa |
303 |
Q |
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|||||||||||| |||| | |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| | ||||||||||| | || ||| |
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| T |
50439596 |
atttccaatatcatcgtcaccaaggttccattcaagccaaggcatgaaacctagactaaagaatttcgcccaataatatggtttgatgattggggaccaa |
50439695 |
T |
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| Q |
304 |
aattatatcgcctcatcacaatctc |
328 |
Q |
| |
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|||| ||| || ||||||||||||| |
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| T |
50439696 |
aattttatagcttcatcacaatctc |
50439720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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