View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13732_high_9 (Length: 421)
Name: NF13732_high_9
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_high_9 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 186 - 421
Target Start/End: Complemental strand, 26832197 - 26831961
Alignment:
| Q |
186 |
gagtattatgaatgcttagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatacctaggggttgagggtcggacctcggactt |
285 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||| |
|
|
| T |
26832197 |
gagtattatggatgctaagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatccaggggttgaggttcaaacctcggactt |
26832098 |
T |
|
| Q |
286 |
ctcacttattcacctttcgatgaatttccaactactaggatgatatagtgcatatagactaacttaannnnnnnncatcatcaccttaattaggaaacac |
385 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
26832097 |
ctcacttattcacttttagatgaatttccaactactaggatgatatagtgcatatagactaacttaattttttttcatcatcacattaattaggaaacac |
26831998 |
T |
|
| Q |
386 |
-ttgaagaagagactaatctcctactaatacattatc |
421 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26831997 |
attgaagaagagactaatctcctactattacattatc |
26831961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 26832346 - 26832206
Alignment:
| Q |
4 |
caaagaagtctagtgttattttcttcctttggttggtttcttgtgtgtgcataaaaagtaacatggaaaaggtggaaaatgctacttaaaagagtgcata |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832346 |
caaagaagtctagtgttattttcttcctttggttggtttcttttgtgtgcataaaaagtaacatggaaaaggtggaaaatgctacttaaaagagtgcata |
26832247 |
T |
|
| Q |
104 |
tttgatttggatacagtctgtcatgagaagtcatcgtcatg |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832246 |
tttgatttggatacagtctgtcatgagaagtcatcgtcatg |
26832206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University