View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13732_low_14 (Length: 347)
Name: NF13732_low_14
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_low_14 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 26832731 - 26832386
Alignment:
| Q |
1 |
tgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcga |
100 |
Q |
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| T |
26832731 |
tgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcga |
26832632 |
T |
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| Q |
101 |
accatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaatttccttttcttctccttcttataatcacattaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832631 |
accatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaatttccttttcttctccttcttataatcacattaac |
26832532 |
T |
|
| Q |
201 |
ttcttttgtttatcttttaggggtcatgctaacttgtgccataaagagctacaaaacaataaaatcaatctgtcggtagattttgtttattttgagaatg |
300 |
Q |
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| T |
26832531 |
ttcttttatttatctttta-gggtcatgctaacttgtgccctaaagagccgcaaaacaataaaatcaaactgtcggtagattttgtttattttgagaatg |
26832433 |
T |
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| Q |
301 |
ttagattttggccgtggctgaagtaagtcccacttagtacttgaatg |
347 |
Q |
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| T |
26832432 |
ttagattttggccgtggctgaagtaagtcccacttagtacttgaatg |
26832386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 26786008 - 26785847
Alignment:
| Q |
6 |
taaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccat |
105 |
Q |
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| T |
26786008 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccat |
26785909 |
T |
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| Q |
106 |
ccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaatt |
167 |
Q |
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| T |
26785908 |
tcctttccttgtcaataatcctgaaattggtctcgttcaggctcgctggaagtttggtaatt |
26785847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 26822649 - 26822488
Alignment:
| Q |
6 |
taaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccat |
105 |
Q |
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|||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| | ||||| || |
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| T |
26822649 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgactttctccgccgaacgat |
26822550 |
T |
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| Q |
106 |
ccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaatt |
167 |
Q |
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| T |
26822549 |
cccttttcttgtcaataatcctgaaattggtctcgttcaggctcgctggaagtttggtaatt |
26822488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 26791748 - 26791590
Alignment:
| Q |
6 |
taaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccat |
105 |
Q |
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|||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
26791748 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgattttctcctccgaaccat |
26791649 |
T |
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| Q |
106 |
ccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggta |
164 |
Q |
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| T |
26791648 |
cccttttcttgtcaataatcctgagattggtctcgttcaagctcgctggaagtttggta |
26791590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 41546288 - 41546352
Alignment:
| Q |
14 |
ggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaacc |
78 |
Q |
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|||||||| ||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
41546288 |
ggaatgaagcatagctatgtcaaactttgtgactatgttgccatctttgatgctgattttcaacc |
41546352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 41917503 - 41917671
Alignment:
| Q |
5 |
ttaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaacca |
104 |
Q |
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||||| || |||||||| |||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||| ||||||||| | ||||| ||| |
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| T |
41917503 |
ttaaaagaaggaatgaagcatagctatgtgaagcaatgtgatcatgttgcaatatttgatgctgattttcaaccagagcctgattttttgtggcgtaccg |
41917602 |
T |
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| Q |
105 |
tccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaatttccttt |
173 |
Q |
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| T |
41917603 |
taccatttatggtgcataatcctgaaattgggcttattcaagctcgttggaaatttggtaattttcttt |
41917671 |
T |
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