View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13732_low_17 (Length: 338)
Name: NF13732_low_17
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 7170920 - 7171229
Alignment:
| Q |
1 |
gaagattagcattttgcaagatggcattattttaaaagagatacatttgacacacccataaatgttgatgcaagtcaattatagctttattttctccatc |
100 |
Q |
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| T |
7170920 |
gaagattagcattttgcaagatggcattattttaaaagagatacatttgacacacccataaatgttgatgcaagtcaattatagctttattttctccatc |
7171019 |
T |
|
| Q |
101 |
cttttttgggatggatggggatattcatgtaacgctaaaggcatttaaataagcatactatataatgtgattattataaaagtcgtctttgatgtttcaa |
200 |
Q |
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| T |
7171020 |
cttttttgggatggatggggatattcatgtaacgctaaaggcatttaaataagcatac-------------tattataaaagtcgtctttgatgtttcaa |
7171106 |
T |
|
| Q |
201 |
taattgatgaaggtacctacctcttcgtaaaaaataccaagtaccctcgatggttgagttgacataccacgtctatacatacatgtagagaatctttcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7171107 |
taattgatgaaggtacctacctcttcgtaaaaaataccaagtaccgtcgatggttgagttgacataccacgtctatacatacatgtagagaatctttcat |
7171206 |
T |
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| Q |
301 |
gagcatcaaaagttcattgacct |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
7171207 |
gagcatcaaaagttcattgacct |
7171229 |
T |
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