View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13732_low_2 (Length: 660)

Name: NF13732_low_2
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13732_low_2
NF13732_low_2
[»] chr2 (6 HSPs)
chr2 (20-491)||(34666399-34666869)
chr2 (496-645)||(15975436-15975585)
chr2 (492-614)||(42149562-42149684)
chr2 (492-632)||(15974709-15974849)
chr2 (491-606)||(40321117-40321232)
chr2 (490-622)||(40320239-40320371)
[»] chr3 (5 HSPs)
chr3 (489-655)||(3936070-3936233)
chr3 (492-639)||(52103419-52103564)
chr3 (20-96)||(15296861-15296937)
chr3 (494-554)||(2190370-2190430)
chr3 (493-579)||(3936682-3936768)
[»] chr5 (2 HSPs)
chr5 (492-635)||(31607256-31607399)
chr5 (492-643)||(31607956-31608107)
[»] chr7 (2 HSPs)
chr7 (492-645)||(3306652-3306805)
chr7 (490-632)||(3305922-3306064)
[»] chr6 (4 HSPs)
chr6 (492-645)||(17439865-17440018)
chr6 (490-632)||(17440604-17440746)
chr6 (505-645)||(20666758-20666898)
chr6 (505-576)||(20667461-20667532)
[»] chr1 (5 HSPs)
chr1 (491-645)||(30430342-30430494)
chr1 (565-639)||(10468749-10468823)
chr1 (490-573)||(30429387-30429470)
chr1 (505-579)||(36139704-36139778)
chr1 (523-635)||(36140637-36140748)
[»] chr4 (3 HSPs)
chr4 (492-573)||(27340743-27340824)
chr4 (492-606)||(17869644-17869758)
chr4 (492-579)||(27339716-27339803)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 491
Target Start/End: Complemental strand, 34666869 - 34666399
Alignment:
Q  20 tctagtacaccggaaaccctcaaa-gtatgagtggataggcttacaccgcactggttgattgaagactttaccattctagatgtataccccttcaattta 118  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||    
T  34666869 tctagcacaccggaaaccctcaaaagtaagagtggataggcttacaccgcactggttaattgaagactttaccattctcgatgtagaccccttcaattta 34666770  T
Q  119 caccattttcaaagattaatttatcattttggccgaggtttgaactttgacacttccacttatgtgagtttacaatgtctttgctatttagtatatctac 218  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  34666769 caccattttcaaagattaatttatcattttggccgaggttcgaactttgacacttccacttatgtgaatttacaatgtctttgctatttagtctatctac 34666670  T
Q  219 cnnnnnnnnnnntagtatccttcgtatcgtctccatcggcaacgactccctcaaatcaaaacttccaaaaaatcaaaggtggcatcatcttaatttagtg 318  Q
    |           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  34666669 caaaaaaaaaa-tagtgtccttcgtatcgtctccatcggcaacgactccctcaaatcaaaacttccaacaaatcaaaggtggcatcatcttaattcagtg 34666571  T
Q  319 ctttggtaactaccacaccaacactgcctccaccggagcnnnnnnntgattctcactccaacagtgaaagctccgtagttacaaaggagatatcagagac 418  Q
    || ||||||||||||||||||||||||||||| ||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34666570 ctctggtaactaccacaccaacactgcctccatcggagcaaaaaaatgattctcgctccaacagtgaaagctccgtagttacaaaggagatatcagagac 34666471  T
Q  419 tccgaatatcaaaagatgtgttgaaattgatcgtatttttcattaatctattttgaaaaatgcgcaagttgat 491  Q
    |||| ||||||||||||| |||||||||||||||  ||| ||||||| ||||||||||||||| |||||||||    
T  34666470 tccg-atatcaaaagatgcgttgaaattgatcgtgatttccattaatttattttgaaaaatgcacaagttgat 34666399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 496 - 645
Target Start/End: Complemental strand, 15975585 - 15975436
Alignment:
Q  496 tcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaagctt 595  Q
    |||||| |||||||||| |||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| || ||||| |||    
T  15975585 tcatctttgctccattttacattcctccatttactcctttccaatgcatggattaatgacacatggcaaaaataaatccaagagctagtaataaaatctt 15975486  T
Q  596 aaaatagagactaattcatctgattcctctcgtcatcttcattgttgata 645  Q
    |||||||||| ||||| || ||||||||||| |||||||||||| |||||    
T  15975485 aaaatagagattaatttatttgattcctctcatcatcttcattgctgata 15975436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 492 - 614
Target Start/End: Complemental strand, 42149684 - 42149562
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaa 591  Q
    |||||||||| ||||||||||||||||| | ||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  42149684 gagttcatctttgctccatttaacattcctccatttactccttttcaatgcatggataaatgacatatgtcaaaaataaatccaagggctaataataaaa 42149585  T
Q  592 gcttaaaatagagactaattcat 614  Q
     ||||||||||||||||||||||    
T  42149584 tcttaaaatagagactaattcat 42149562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 492 - 632
Target Start/End: Original strand, 15974709 - 15974849
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaa 591  Q
    |||||||||| |||||||||| |||||| ||||||||||| | | |||||||||||| |||||||||||||||||||| ||| || || ||| | |||||    
T  15974709 gagttcatctttgctccattttacattccttcatttactcattttcaatgcatggattaatgacacatggcaaaaatagatctaaaggttaagattaaaa 15974808  T
Q  592 gcttaaaatagagactaattcatctgattcctctcgtcatc 632  Q
      ||||||  ||||| |||| | || ||||||||| |||||    
T  15974809 tgttaaaactgagaccaatttaacttattcctctcatcatc 15974849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 491 - 606
Target Start/End: Complemental strand, 40321232 - 40321117
Alignment:
Q  491 tgagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaa 590  Q
    ||||||||||| ||||||||||| | ||  | ||||||||||| | |||||||| |||  ||||||||||| ||||||||||||||||||| | | ||||    
T  40321232 tgagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggctgaaattaaa 40321133  T
Q  591 agcttaaaatagagac 606  Q
     | |||| ||||||||    
T  40321132 tggttaacatagagac 40321117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 622
Target Start/End: Original strand, 40320239 - 40320371
Alignment:
Q  490 atgagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaa 589  Q
    |||||||||||| ||||||||||| | ||  | |||||| |||| | |||||||| |||  ||||||||||| ||||||||||| ||||||| | | |||    
T  40320239 atgagttcatctttgctccatttagccttgctccatttaatccttttcaatgcatagatgcatgacacatggtaaaaataaatctaagggctgaaattaa 40320338  T
Q  590 aagcttaaaatagagactaattcatctgattcc 622  Q
    ||| |||| ||| | ||| || ||||| |||||    
T  40320339 aaggttaacataaacacttatccatcttattcc 40320371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 489 - 655
Target Start/End: Original strand, 3936070 - 3936233
Alignment:
Q  489 gatgagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatacta 588  Q
    ||||||||||||| |||||||||||   ||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3936070 gatgagttcatctctgctccattta---ttcctccatttactcctctccaatgcatggataaatgacacatgacaaaaataaatccaagggctaatacta 3936166  T
Q  589 aaagcttaaaatagagactaattcatctgattcctctcgtcatcttcattgttgatagctgcctctc 655  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3936167 aaagcttaaaatagagactaattcatctgattcctctcgttatcttcattgctgatagctgcctctc 3936233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 492 - 639
Target Start/End: Complemental strand, 52103564 - 52103419
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaa 591  Q
    |||||||||| ||||||||||||||||| | ||||||||||| |||||||||| ||||||||| | ||| ||||  |||||||||||| ||||| |||||    
T  52103564 gagttcatctttgctccatttaacattcctccatttactcctttccaatgcatagataaatgatatatgtcaaa--taaatccaagggttaataataaaa 52103467  T
Q  592 gcttaaaatagagactaattcatctgattcctctcgtcatcttcattg 639  Q
     |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  52103466 tcttaaaatagagactaattcatttgattcctctcatcatcttcattg 52103419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 15296937 - 15296861
Alignment:
Q  20 tctagtacaccggaaaccctcaaagtatgagtggataggcttacaccgcactggttgattgaagactttaccattct 96  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  15296937 tctagcacaccggaaaccctcacagtaagagtggataggcttacaccgcaccggttaattgaagactttaccattct 15296861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 2190370 - 2190430
Alignment:
Q  494 gttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatga 554  Q
    |||||| | ||||||||||||||||| | ||||||||||| |||||||| |||||||||||    
T  2190370 gttcatatttgctccatttaacattcctccatttactcctttccaatgcctggataaatga 2190430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 579
Target Start/End: Complemental strand, 3936768 - 3936682
Alignment:
Q  493 agttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaaggg 579  Q
    ||||||||| ||||||||||||||||| | |||||| |||| || ||| ||  ||||| |||||  |||||||||  ||||||||||    
T  3936768 agttcatctttgctccatttaacattcctccatttaatcctttcgaattcacagataagtgacatgtggcaaaaaccaatccaaggg 3936682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 492 - 635
Target Start/End: Original strand, 31607256 - 31607399
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaa 591  Q
    |||||||||| ||||||||||||| ||| | ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  31607256 gagttcatctttgctccatttaacgttcctccatttactccttttcaatgcatggataaatgacacatggaaaaaataaatccaagggctaataataaaa 31607355  T
Q  592 gcttaaaatagagactaattcatctgattcctctcgtcatcttc 635  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||    
T  31607356 gcttaaaatagagtctaattcatttgattcctctcatcatcttc 31607399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 492 - 643
Target Start/End: Complemental strand, 31608107 - 31607956
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaa 591  Q
    |||||||||| ||||||||||||||||| | || ||||| || | ||||||||||||||||||||||||| |||||||||||||| || ||||| |||||    
T  31608107 gagttcatctttgctccatttaacattcctccaattacttcttttcaatgcatggataaatgacacatggaaaaaataaatccaaaggttaataataaaa 31608008  T
Q  592 gcttaaaatagagactaattcatctgattcctctcgtcatcttcattgttga 643  Q
    ||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||    
T  31608007 gcttaaagtagagcctaattcatttgattcctctcatcatcttcattgttga 31607956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 492 - 645
Target Start/End: Complemental strand, 3306805 - 3306652
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaa 591  Q
    |||||||||| |||||||||| ||||| || ||||||||||| |||||||||||||| ||||||| ||| |||||||||||| |||||||| || |||||    
T  3306805 gagttcatctttgctccattttacatttttccatttactcctttccaatgcatggattaatgacatatgacaaaaataaatctaagggctagtaataaaa 3306706  T
Q  592 gcttaaaatagagactaattcatctgattcctctcgtcatcttcattgttgata 645  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  3306705 gcttaaaatagagattaattcatttgattcctctcatcatcttcattgttgata 3306652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 490 - 632
Target Start/End: Original strand, 3305922 - 3306064
Alignment:
Q  490 atgagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaa 589  Q
    |||||||||||| |||||||||| |||||| | |||||||| || |||||||||||||| |||||||||| ||||||||| ||| || || ||| | |||    
T  3305922 atgagttcatctttgctccattttacattcctccatttacttctttccaatgcatggattaatgacacatagcaaaaatagatctaaaggttaagattaa 3306021  T
Q  590 aagcttaaaatagagactaattcatctgattcctctcgtcatc 632  Q
    ||  ||||||| ||||| |||| | || ||||||||| |||||    
T  3306022 aatgttaaaattgagaccaatttaacttattcctctcatcatc 3306064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 9e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 492 - 645
Target Start/End: Original strand, 17439865 - 17440018
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaa 591  Q
    |||||||| | | |||||||| |||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | || |||||    
T  17439865 gagttcatatttactccattttacattcctccatttactcctttccaatgcatggattaatgacacatggcaaaaataaatccaagggccagtaataaaa 17439964  T
Q  592 gcttaaaatagagactaattcatctgattcctctcgtcatcttcattgttgata 645  Q
     | ||||||||||| |||||||| ||||||||||| |||||||||||| |||||    
T  17439965 acataaaatagagattaattcatttgattcctctcatcatcttcattgctgata 17440018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 632
Target Start/End: Complemental strand, 17440746 - 17440604
Alignment:
Q  490 atgagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaa 589  Q
    ||||||| |||| |||||||||| |||||| | ||||||||||| |||||||||||||| |||||||||||||||||||| ||| || || ||| | |||    
T  17440746 atgagtttatctttgctccattttacattcctccatttactcctttccaatgcatggattaatgacacatggcaaaaatagatctaaaggttaagattaa 17440647  T
Q  590 aagcttaaaatagagactaattcatctgattcctctcgtcatc 632  Q
    ||  ||||||| ||||| |||| | || ||||||||| |||||    
T  17440646 aatgttaaaattgagaccaatttaacttattcctctcatcatc 17440604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 505 - 645
Target Start/End: Original strand, 20666758 - 20666898
Alignment:
Q  505 ctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaagcttaaaatagag 604  Q
    |||||| || ||||| | ||| ||||||| |||||||||||||||||||| || ||||||| |||||||||| || | ||| |||||| |||||| ||||    
T  20666758 ctccatatagcattcctccatctactcctttccaatgcatggataaatgatacgtggcaaatataaatccaaaggttgatattaaaaggttaaaacagag 20666857  T
Q  605 actaattcatctgattcctctcgtcatcttcattgttgata 645  Q
     | | ||||||| ||||||||| |||||||| | |||||||    
T  20666858 gccatttcatctaattcctctcatcatcttcttcgttgata 20666898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 505 - 576
Target Start/End: Complemental strand, 20667532 - 20667461
Alignment:
Q  505 ctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaa 576  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||    
T  20667532 ctccatttagcattcctccatttactcctttccaatgcatggataaatgacatgtggcaaatataaatccaa 20667461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 491 - 645
Target Start/End: Complemental strand, 30430494 - 30430342
Alignment:
Q  491 tgagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaa 590  Q
    ||||||||||| |||||||||||  |||| | ||||||||||| |||||||||| |||||||||||  ||||||||||||||| ||||| ||| | ||||    
T  30430494 tgagttcatctttgctccatttagtattcctccatttactcctttccaatgcatagataaatgacatgtggcaaaaataaatcaaagggttaagattaaa 30430395  T
Q  591 agcttaaaatagagactaattcatctgattcctctcgtcatcttcattgttgata 645  Q
    || |||||||| || | | ||||  | ||||||||| |||||||| | |||||||    
T  30430394 agtttaaaatataggccatttca--taattcctctcatcatcttcttcgttgata 30430342  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 565 - 639
Target Start/End: Original strand, 10468749 - 10468823
Alignment:
Q  565 aaataaatccaagggctaatactaaaagcttaaaatagagactaattcatctgattcctctcgtcatcttcattg 639  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  10468749 aaataaatccaagggctaataataaaatcttaaaatagagactaattcagttgattcctctcatcatcttcattg 10468823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 573
Target Start/End: Original strand, 30429387 - 30429470
Alignment:
Q  490 atgagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatc 573  Q
    |||||||||||| |||||||||||  |||| | ||||| ||||| ||||||||||||||||||||||  ||||||| |||||||    
T  30429387 atgagttcatctttgctccatttagtattcctccatttgctcctttccaatgcatggataaatgacatgtggcaaagataaatc 30429470  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 579
Target Start/End: Original strand, 36139704 - 36139778
Alignment:
Q  505 ctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaaggg 579  Q
    ||||||||| ||||| |  |||||||||| |||||| ||| ||||| |||||  ||||||||| |||||||||||    
T  36139704 ctccatttaccattcctcaatttactcctgtccaatacatagataagtgacatgtggcaaaaagaaatccaaggg 36139778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 635
Target Start/End: Complemental strand, 36140748 - 36140637
Alignment:
Q  523 catttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaagcttaaaatagagactaattcatctgattcc 622  Q
    ||||||||||| |||||| |||||||||  ||||  | ||||||| ||||||||||| | | | |||||  ||||||| | ||| ||||||||| ||||     
T  36140748 catttactcctttccaatacatggataagcgacatgttgcaaaaagaaatccaagggttgagattaaaatgttaaaat-gggaccaattcatcttattct 36140650  T
Q  623 tctcgtcatcttc 635  Q
    |||| ||||||||    
T  36140649 tctcatcatcttc 36140637  T

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Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 492 - 573
Target Start/End: Complemental strand, 27340824 - 27340743
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatc 573  Q
    |||||||||| |||||||||||  |||| | ||||||||||| ||||||||||||||||||||||  ||||||| |||||||    
T  27340824 gagttcatctttgctccatttagtattcctccatttactcctttccaatgcatggataaatgacatgtggcaaagataaatc 27340743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 606
Target Start/End: Original strand, 17869644 - 17869758
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaagggctaatactaaaa 591  Q
    |||||||||| ||||||||||| | ||  | ||||||||||| | |||||||| |||  ||||||||||| ||||||||||||||||||| | | ||||     
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggctgaaattaaat 17869743  T
Q  592 gcttaaaatagagac 606  Q
    | |||| ||||||||    
T  17869744 ggttaacatagagac 17869758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 579
Target Start/End: Original strand, 27339716 - 27339803
Alignment:
Q  492 gagttcatctatgctccatttaacattctttcatttactcctctccaatgcatggataaatgacacatggcaaaaataaatccaaggg 579  Q
    |||||||||| |||||||||||  |||||| ||||||||| | |||||||||| |||| |||| |  ||| ||||||||||| |||||    
T  27339716 gagttcatctttgctccatttagtattcttccatttactcatttccaatgcatagatagatgatatgtggtaaaaataaatcaaaggg 27339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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