View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13732_low_3 (Length: 620)
Name: NF13732_low_3
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 29021291 - 29020708
Alignment:
| Q |
1 |
attaaatctatttgcaaccttaatagtattgaacgcacattaattaaaatgtattcaaaggtatttttgttttgaatttacacacctaacttttgagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29021291 |
attaaatctatttgcaaccttaatagtattgaacgcacattagttaaaatgtattcaaaagtatttttgttttgaatttacacacctaacttttgagttt |
29021192 |
T |
|
| Q |
101 |
attttatgtgcaaagaataaaaaggtcttctcttcacgtccagggtagctttgtgtgactagattatttgttgttgtcttcgtgttgtttggtgtcgtgt |
200 |
Q |
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| T |
29021191 |
attttatgtgcaaagaataaaaaggtcttctcttcacgtccagggtagctttgtgtgactagattatttgttgttgtcttcgtgtt-------------- |
29021106 |
T |
|
| Q |
201 |
taatgataccaagggaacatgctgcaattctttatgtaatttttcattgttgcaattgaaatgaaacaagtttttagctatgtttggtctaataaaggtc |
300 |
Q |
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| T |
29021105 |
-aatgataccaagggaacatgttgcaattctttatgtaatttttcattgttggaattgaaatgaaacaaatttttagctatgtttggtctaataaaggtc |
29021007 |
T |
|
| Q |
301 |
atcccacgactttggtgtttggagaatacaaagagtagccccttggtatttccggattggtgtgtcgacccaatgggctgtgtagggtttaatctgatat |
400 |
Q |
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| T |
29021006 |
atcccacgactttggtgtttggagaatacaaagagtatccccttggtatttccggattggtgtgtcgacccaatgggctgtgtagggtttaatctcatat |
29020907 |
T |
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| Q |
401 |
tttctcttgcttggagttctggagttttctgtccagttttcagcatg-----atttagctgctatggtttgatcaagaatcaaaatcgcattcctgagtt |
495 |
Q |
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| T |
29020906 |
tttctcttgcttggagttatggcgctttctgtccagttttcagtaggattgaatttagctgctgtgg-ttgatcaagaatcaaaatggcattctcgagtt |
29020808 |
T |
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| Q |
496 |
gagtgtggatctgatttttgaaacttggtggttgtgatgtgacttatgaggggtgattaagatgttctattttcaatatttttgagttacaatgaatagt |
595 |
Q |
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| T |
29020807 |
gggtgagaatttgatttttgaaacgtggtggt-----tgtgacttgtgaggagtgatt-agatgttctattttcaatatttcggagttacaacaaatggt |
29020714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 355 - 514
Target Start/End: Original strand, 28696511 - 28696669
Alignment:
| Q |
355 |
gattggtgtgtcgacccaatgggctgtgtagggtttaatctgatattttctcttgcttggagttctggagttttctgtccagttttcagcatgatttagc |
454 |
Q |
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| T |
28696511 |
gattggtgtgtcgacccaattggctgtgtagggtttaatctgatattttctcttgcttggagttctggatctttctgtccatttttcagcatgatttagt |
28696610 |
T |
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| Q |
455 |
tgctatggtttgatcaagaatcaaaatcgcattcctgagttgagtgtggatctgattttt |
514 |
Q |
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| T |
28696611 |
tgctgtgg-ttgatcaagaatcaaagtggcattcttgagttgggagtggatctgattttt |
28696669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28673873 - 28673982
Alignment:
| Q |
1 |
attaaatctatttgcaaccttaat-agtattgaacgcacattaattaaaatgtattcaaaggtatttttgttttgaatttacacacctaacttttgagtt |
99 |
Q |
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| T |
28673873 |
attaaatctatttgcaaccttaatcagtattgaatgcacattagttataatgtattcaaaactatttttgttttgaatttacacacctaacttttgggtt |
28673972 |
T |
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| Q |
100 |
tattttatgt |
109 |
Q |
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| T |
28673973 |
gattttatgt |
28673982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28696088 - 28696197
Alignment:
| Q |
1 |
attaaatctatttgcaaccttaat-agtattgaacgcacattaattaaaatgtattcaaaggtatttttgttttgaatttacacacctaacttttgagtt |
99 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
28696088 |
attaaatctatttgcaaccttaatcagtattgaatgcacattagttataatgtattcaaaactatttttgttttgaatttacacacctaacttttgggtt |
28696187 |
T |
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| Q |
100 |
tattttatgt |
109 |
Q |
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| T |
28696188 |
gattttatgt |
28696197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 28674057 - 28674139
Alignment:
| Q |
163 |
attatttgttgttgtcttcgtgttgtttggtgtcgtgttaatgataccaagggaacatgctgcaattctttatgtaatttttc |
245 |
Q |
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| T |
28674057 |
attatttcttgctgtcttcatctagttttttgtcgtgttaatgatacgaagggaacatgcagcaattctttatgtaatttttc |
28674139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 28696272 - 28696354
Alignment:
| Q |
163 |
attatttgttgttgtcttcgtgttgtttggtgtcgtgttaatgataccaagggaacatgctgcaattctttatgtaatttttc |
245 |
Q |
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||||||| ||| ||||||| | | |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
28696272 |
attatttcttgctgtcttcatctagttttttgtcgtgttaatgatacgaagggaacatgcagcaattctttatgtaatttttc |
28696354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 590
Target Start/End: Original strand, 28696689 - 28696736
Alignment:
| Q |
542 |
tgaggggtgattaagatgttctattttcaatatttttgagttacaatga |
590 |
Q |
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| T |
28696689 |
tgaggggtgatta-gatgttctattttcaatattatagagttacaatga |
28696736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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