View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13732_low_4 (Length: 601)
Name: NF13732_low_4
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 37 - 587
Target Start/End: Original strand, 8878192 - 8878742
Alignment:
| Q |
37 |
ctgcctctctcccttgcatgcatataattaaattttttacatacttaaatacatacatttaacttataatatgtgtacttcattttattgaaaaaatgtt |
136 |
Q |
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| T |
8878192 |
ctgcctctctcccttgcatgcatataattaaattttttacatacttaaatacatacatttaacttataatatgtgtacttcattttattgaaaaaatgtt |
8878291 |
T |
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| Q |
137 |
gcaatcttcctaaaatttatgttcattttacatacttggcgtcgtagannnnnnngtttgggaggaacatctcttgaacgcattattggaggatttggag |
236 |
Q |
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| T |
8878292 |
gcaatcttcctaaaatttatgttcattttacatacttggcgtcgtagatttttttgtttgggaggaacatctcttgaacgcattattggaggatttggag |
8878391 |
T |
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| Q |
237 |
ggccacgtgtggaatcatgagaatgatagttgggtgtggaaaggggaagcggagggagtttttacggtaaaatccatgtataagaagttggaagggttgt |
336 |
Q |
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| T |
8878392 |
ggccacgtgtggaatcatgagaatgatagttgggtgtggaaaggggaagccgagggagtttttacggtaaaatccatgtataagaagttggaagggttgt |
8878491 |
T |
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| Q |
337 |
ttattttggaggatacttggggagatgaggatagaagagtgttccatcaattatggaaaagtccggcgccctctaaggtgattgcgttttcgtggaagat |
436 |
Q |
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| T |
8878492 |
ttattttggaggatacttggggagatgaggatagaagagtgttccatcaattatggaaaagtccggcgccctctaaggtgattgcgttctcgtggaagat |
8878591 |
T |
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| Q |
437 |
gttgcttgataggattcctactcggaccaatcttagtagaaggaatgctcttccaccggaggttcctttgaattgtgtttggtgcgttggggagagggag |
536 |
Q |
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| T |
8878592 |
gttgcttgataggattcctactcggaccaatcttagtagaaggaatgctcttccaccggaggttcctttgaattgtgtttggcgcgttggggagagggag |
8878691 |
T |
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| Q |
537 |
atgacgaagcatcnnnnnnngcattgtagtcttgcaagggatgtttggtta |
587 |
Q |
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| T |
8878692 |
atgacgaagcatctttttttgcattgtagtcttgcaaggggtgtttggtta |
8878742 |
T |
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