View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13732_low_5 (Length: 589)
Name: NF13732_low_5
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 122 - 554
Target Start/End: Complemental strand, 24149817 - 24149387
Alignment:
| Q |
122 |
cattgggaattaatgtggaactatagaggaagatagagtgagggtatttgggttagtctttaattaaatgctagaatatcagctttatt--atnnnnnnn |
219 |
Q |
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| T |
24149817 |
cattgggaattaatgtggaactatagaggaagatagagtgagggtatttgggttagtctctaattaaatgctagaatatcagctttattttataaaataa |
24149718 |
T |
|
| Q |
220 |
nnnnnnnnnntaattgtttattttaactagagaatatgtgtggcttacgcttcgttttgaatcacaaccaatctgatcatacctttccaggttaggnnnn |
319 |
Q |
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| T |
24149717 |
aataaaaaaataattgtttattttaactagagaatatgtgtggtttacgctttgttttgaatcacaaccaatctgatcatacctttccaggttaggaaaa |
24149618 |
T |
|
| Q |
320 |
nnntgtcttcttccaaagtaaaaagggtttagtttatgatttatcatttatggttcagttaaattccaaaagcacctgggaagggtggtaaaagctgttt |
419 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24149617 |
aaatgtcttcttccaaagtaaaaagggttaagtttatgatttatcatttatggttcagttaaattccaaaagcacctgggaag---ggtaaaagctgttt |
24149521 |
T |
|
| Q |
420 |
tctgcnnnnnnnaaaagaagcacgttgtagagttagtacttagcagtcaccttcactggccataattaaatttgtgaatatttgttacttgaggatagtt |
519 |
Q |
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| T |
24149520 |
tctgc-ttttttaaaagaagcacgttgtagagttagtacttagcagtcaccttcactggccataattaaatttgtgaatatttgttacttgaggatagtt |
24149422 |
T |
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| Q |
520 |
cagtaattagcttagacattgtattatatatatat |
554 |
Q |
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| T |
24149421 |
cagtaattagcttagacattgtattatatatatat |
24149387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 24151019 - 24150918
Alignment:
| Q |
8 |
atactagggagattaatattcttggaataataactaaaag-nnnnnnnnnagtttgatttgagactatcttgacc--aacagttcaaatattttgaaact |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
24151019 |
atactagggagattaatattcttggaataataactaaaagttttttttttagtttgatttgagactatcttgacccacacagttcaaatattttcaaact |
24150920 |
T |
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| Q |
105 |
aa |
106 |
Q |
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|| |
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| T |
24150919 |
aa |
24150918 |
T |
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