View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13732_low_6 (Length: 550)
Name: NF13732_low_6
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 182 - 533
Target Start/End: Original strand, 42544118 - 42544469
Alignment:
| Q |
182 |
tattagaagttagggtttgttcttaagcccattattaagacccaaattctaaatttaaattgatacgaacaactttactttctacaccacaattgtaggt |
281 |
Q |
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| T |
42544118 |
tattagaagttagggtttgttcttaagcccattattaagacctaaattctaaatttaaattgatacgaacaactttactttctacacgacaattgtaggt |
42544217 |
T |
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| Q |
282 |
catacacccaccgaaccatttcttttttgagagaacactcaccgaaccatgaaaagtcaatttaaccactaatcgcatttaaattgtctcagtttctcat |
381 |
Q |
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| T |
42544218 |
catacacccaccgaacctttttttttgagagagaacactcaccgaaccatgaaaagtcaattttaccactaatcgcatttaaattgtctcagtttctcat |
42544317 |
T |
|
| Q |
382 |
tttcactaacttagtgcgacaaaatgatagattttgatctagaattttatttctaaattgtgcgtaagaaaaaacttatatttagagagtttaatttctt |
481 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42544318 |
tttcactatcttagtgcgacaaaatgatagattttgatctagaattttatttctaaattgtgcgtatgaaaaaacttatatttagagagtttaatttctt |
42544417 |
T |
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| Q |
482 |
aaacaattttcgattactttgaattagtaccacaccactgatgattgatcct |
533 |
Q |
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| T |
42544418 |
aaacaattttcgattactttgaattagtaccacaccactgatgattgatcct |
42544469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 42543916 - 42544079
Alignment:
| Q |
1 |
gaatttatttgaaggaaaattgctttttgacattgaatacttcctatttacacacacattgaatacttcctatttctaaaccacaaccctaacttttgat |
100 |
Q |
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| T |
42543916 |
gaatttatttgaaggaaaattgctttttgacattgaatacttcctatttacacacacattgaatacttcctatttctaaaccacaaccctaacttttgat |
42544015 |
T |
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| Q |
101 |
gatttgctatgattttacaggtttcgatagaaaaatcaaaacgcaa-ttttttcgcgtactcgt |
163 |
Q |
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| T |
42544016 |
gatttgctatgattttatacgtttcgatagaaaaatcaaaacgcaatttttttcgcgtactcgt |
42544079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 45415526 - 45415493
Alignment:
| Q |
15 |
gaaaattgctttttgacattgaatacttcctatt |
48 |
Q |
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| T |
45415526 |
gaaaattgctttctgacattgaatacttcctatt |
45415493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 14441171 - 14441132
Alignment:
| Q |
15 |
gaaaattgctttttgacattgaatacttcctatttacaca |
54 |
Q |
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| T |
14441171 |
gaaaattgctttttgacatagaatacttcctattgacaca |
14441132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 22965823 - 22965782
Alignment:
| Q |
14 |
ggaaaattgcttttt-gacattgaatacttcctatttacaca |
54 |
Q |
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| T |
22965823 |
ggaaaattgcttttttgacattgaatacttcctattgacaca |
22965782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 8214365 - 8214325
Alignment:
| Q |
15 |
gaaaattgcttttt-gacattgaatacttcctatttacaca |
54 |
Q |
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| T |
8214365 |
gaaaattgcttttttgacattgaatacttcctattgacaca |
8214325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 10602276 - 10602235
Alignment:
| Q |
14 |
ggaaaattgcttttt-gacattgaatacttcctatttacaca |
54 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
10602276 |
ggaaaattgcttttttgacattgaatacttcctattgacaca |
10602235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 40469298 - 40469258
Alignment:
| Q |
15 |
gaaaattgcttttt-gacattgaatacttcctatttacaca |
54 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| |
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| T |
40469298 |
gaaaattgcttttttgacattgaatacttcctattgacaca |
40469258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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