View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13732_low_8 (Length: 448)
Name: NF13732_low_8
Description: NF13732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13732_low_8 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0702 (1 HSPs) |
| | |
|
| [»] scaffold1779 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 32 - 430
Target Start/End: Original strand, 18343150 - 18343548
Alignment:
| Q |
32 |
catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343150 |
catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta |
18343249 |
T |
|
| Q |
132 |
tattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc |
231 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343250 |
tattttctgggacccctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc |
18343349 |
T |
|
| Q |
232 |
ggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatt |
331 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343350 |
ggtaggtcttactgtaacaggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatt |
18343449 |
T |
|
| Q |
332 |
tgtctagatgtgatctaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcga |
430 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343450 |
tgtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcga |
18343548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 22101579 - 22101625
Alignment:
| Q |
75 |
tgaattgagttcgtataggcattttggatgccgctattgaaatagcc |
121 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22101579 |
tgaattgagttcgtatagacattttggatgccgctattgaaatagcc |
22101625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 33 - 430
Target Start/End: Complemental strand, 164218 - 163821
Alignment:
| Q |
33 |
atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctat |
132 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164218 |
atactaaagacctatttcgatctaatgattattctgaaagaatgaattgagttcttataggcattttggatgccgctattgaaatagcctttctagctat |
164119 |
T |
|
| Q |
133 |
attttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcg |
232 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164118 |
attttctgggaccccgcccatttcataaagtattttgtcgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcg |
164019 |
T |
|
| Q |
233 |
gtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctattt |
332 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
164018 |
gtagatcttaatgtaacaggtttgtctggaaatatgcatacccatattttcccacctcggcgaacatttcgtgacattgcccatcgccctacttctattt |
163919 |
T |
|
| Q |
333 |
gtctagatgtgatctaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcga |
430 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163918 |
gtctagatgtgatccaagcgggctcaagtgcctaaagaacatatttttcgaaggaaattgtattacctcgataggcttttcctttcattcttcctcga |
163821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 72 - 428
Target Start/End: Original strand, 277909 - 278265
Alignment:
| Q |
72 |
gaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttctgggacgcctcccatttcataaagtattttgcc |
171 |
Q |
| |
|
|||| |||||| ||||||| |||||||| |||||||| || ||||| |||||||| | |||| | || || ||||||||||||||||| || |
|
|
| T |
277909 |
gaataaattgacttcgtatgggcattttactggccgctatggagatagctgctctagctacagtttcagatactccccccatttcataaagtatacgacc |
278008 |
T |
|
| Q |
172 |
gggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgt |
271 |
Q |
| |
|
|||||||| || ||||||||||||||||| || || |||||||| |||||||| ||||| || ||||||| |||||| |||||||| |||||||| ||| |
|
|
| T |
278009 |
tggtttaacaacggctacccaatattcgggggacccctttcccgagcccatacgtgtttccgtgggtcttagtgtaaccggtttgtcgggaaatatacgt |
278108 |
T |
|
| Q |
272 |
acccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatctaagcgggctcaagtgcctgaagag |
371 |
Q |
| |
|
||||||||||| ||||| || || ||| ||||| ||||| | ||| ||||||||||| ||||| | |||||| ||||||| |||||||| ||||||| |
|
|
| T |
278109 |
acccatatttttccaccacgacgtgcatatcgtgttattgctcttcgtcctgcttctatctgtctcgccgtgatccaagcgggttcaagtgcttgaagag |
278208 |
T |
|
| Q |
372 |
catattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctc |
428 |
Q |
| |
|
||||| | || || |||| ||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
278209 |
catatctaccaaaacaaatacgattgcctcggaaggattttcctttcattcttcctc |
278265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 146 - 430
Target Start/End: Complemental strand, 7202 - 6918
Alignment:
| Q |
146 |
cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
7202 |
cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagattcttttcctgaacccatacgcgtttcggtaggtattactg |
7103 |
T |
|
| Q |
246 |
taacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgat |
345 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7102 |
taacaggtttgtctggaaatatacgtacccatattttcccacctcggcaaacattttgtgatattgcccgtcgccttgcttctatttgtctagatgtgat |
7003 |
T |
|
| Q |
346 |
ctaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcga |
430 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7002 |
ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcga |
6918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 146 - 430
Target Start/End: Complemental strand, 35195287 - 35195003
Alignment:
| Q |
146 |
cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
35195287 |
cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagattcttttcctgaacccatacgcgtttcggtaggtattactg |
35195188 |
T |
|
| Q |
246 |
taacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgat |
345 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35195187 |
taacaggtttgtctggaaatatacgtacccatattttcccacctcggcaaacattttgtgatattgcccgtcgccttgcttctatttgtctagatgtgat |
35195088 |
T |
|
| Q |
346 |
ctaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcga |
430 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195087 |
ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcga |
35195003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 36840925 - 36841142
Alignment:
| Q |
32 |
catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840925 |
catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta |
36841024 |
T |
|
| Q |
132 |
tattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc |
231 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841025 |
tattttctgggacccctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc |
36841124 |
T |
|
| Q |
232 |
ggtaggtcttactgtaac |
249 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36841125 |
ggtaggtcttactgtaac |
36841142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 66 - 428
Target Start/End: Complemental strand, 524 - 162
Alignment:
| Q |
66 |
ctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttctgggacgcctcccatttcataaagtat |
165 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||||| || ||||||||||||||||||||||| ||||||||||| | || || | ||||||||||||||| |
|
|
| T |
524 |
ctgaaataatgaattgcgtttttataggcatttttgacgccgctattgaaatagcctttctggctatattttcggctactccactcatttcataaagtat |
425 |
T |
|
| Q |
166 |
tttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaat |
265 |
Q |
| |
|
| |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
424 |
tctgcccggtttaacgacagctacccaatactcgggagatcctttccccgaacccatacgtgtttctgtaggtcttaccgtaactggtttgtctggaaat |
325 |
T |
|
| Q |
266 |
atgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatctaagcgggctcaagtgcct |
365 |
Q |
| |
|
|| |||||||||| ||| ||||| ||||| |||||||||| |||||| || ||||| |||||||||||||||||||| ||| ||||||| |||||||| | |
|
|
| T |
324 |
atacgtacccatagttttccaccacggcgtacatttcgtgtcattgcgcggcgccccgcttctatttgtctagatgtaatccaagcgggttcaagtgctt |
225 |
T |
|
| Q |
366 |
gaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctc |
428 |
Q |
| |
|
||||||||||| | ||||| |||| |||||||||||| | | | || ||||||||||||| |
|
|
| T |
224 |
gaagagcatatctaccgaaacaaatccgattacctcgataagatatccccttcattcttcctc |
162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 18375148 - 18374946
Alignment:
| Q |
32 |
catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta |
131 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18375148 |
catattaaagatctatttcgttctaatagttattctcaaagaataaattgagttcgtataggcattttggatgccgctattgaaatattctttctagcta |
18375049 |
T |
|
| Q |
132 |
tattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc |
231 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||| | | |||||||| ||| ||| ||||| || | |||| |||||| ||||||||||| |||||| |
|
|
| T |
18375048 |
tattttttggga--ccccccatttcataaagtatttagtcaggtttaacaacaactattcaata-tcagaagattcttttctcgaacccatactcgtttc |
18374952 |
T |
|
| Q |
232 |
ggtagg |
237 |
Q |
| |
|
|||||| |
|
|
| T |
18374951 |
ggtagg |
18374946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 150 - 278
Target Start/End: Complemental strand, 10258437 - 10258309
Alignment:
| Q |
150 |
ccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaac |
249 |
Q |
| |
|
||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||| |||| |
|
|
| T |
10258437 |
ccatttcataaagtattttaccggatttaatgacagctacccaatattcgggagatccgtttcccaaacccatacacgtttcagtaggtcttactctaac |
10258338 |
T |
|
| Q |
250 |
gggtttgtctggaaatatgcgtacccata |
278 |
Q |
| |
|
|||||||||||| ||||| |||||||| |
|
|
| T |
10258337 |
aagtttgtctggaattatgcatacccata |
10258309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 46634322 - 46634463
Alignment:
| Q |
33 |
atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggat-----gccgctattgaaatagcctttcta |
127 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| ||||||||||||| ||| ||| |||||||||| |||||| || |||||||||||||| |||||| |
|
|
| T |
46634322 |
atactaaagacatatttggttctaattattcttctgaaagaatg-attaggtttgtataggcatcttggatgtcgcgctgctattgaaatagcttttcta |
46634420 |
T |
|
| Q |
128 |
gctata-ttttctgggacgcctcccatttcataaagtattttg |
169 |
Q |
| |
|
|||||| |||| ||| | |||||||||||||||| ||||||| |
|
|
| T |
46634421 |
gctatatttttttggaatccctcccatttcataaaatattttg |
46634463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 5478421 - 5478497
Alignment:
| Q |
284 |
ccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatctaagcgggctcaag |
360 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
5478421 |
ccacctcgacgaacatttcgtgacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaag |
5478497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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