View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13733_high_11 (Length: 326)
Name: NF13733_high_11
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 32809300 - 32809031
Alignment:
| Q |
20 |
ctctatcatattcatcttcatctatcatttatctgcctctcaccaatcttacaaatatattcccatgtgatatatgccacaatgtgagagactcacatgg |
119 |
Q |
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| T |
32809300 |
ctctatcatattcaacttcatctatcatttatctccctctcaccaatcttacaaatatat-------------ataccacaatgtgagagactcacatgg |
32809214 |
T |
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| Q |
120 |
tcaagttattttgcttcaacnnnnnnnctcaagtatggaggatcctcacgacaaggagaacacaacaccgttggaggcaaggtgtgcattgaccgtcaag |
219 |
Q |
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| T |
32809213 |
tcaagttattttgcttcaaccttttt-ctcaagtatggaggagcctcacgacaaggagaccacaacaccgttggaggcaaggtgtgca---------aag |
32809124 |
T |
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| Q |
220 |
gctgtaaccttgggcatgggtggaatcggtaaacaggaggtgaa-tatatctctgcattttgttcatcacttgctcctgctttctcttcttaa |
311 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32809123 |
gctgcaaccttgggcatgggtggaatcggtaaacaggtagtgatctctatctctgcattttgttcatcacttgctcttgctttctcttcttaa |
32809031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 148 - 311
Target Start/End: Complemental strand, 32275452 - 32275289
Alignment:
| Q |
148 |
tcaagtatggaggatcctcacgacaaggagaacacaacaccgttggaggcaaggtgtgcattgaccgtcaaggctgtaaccttgggcatgggtggaatcg |
247 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |
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| T |
32275452 |
tcaagtatggaggagcctcacgacaaggagaacccaacaccgttggaggcaaggtgtgcaatgaccgtcaaggctgcaagcttgggcatgggtggaatcg |
32275353 |
T |
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| Q |
248 |
gtaaacaggaggtgaatatatctctgcattttgttcatcacttgctcctgctttctcttcttaa |
311 |
Q |
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| T |
32275352 |
gtaaacaggtagtgaatctatctctgcattttattcatcacttgctcttgctttctcttcttaa |
32275289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 32269144 - 32268981
Alignment:
| Q |
147 |
ctcaagtatggaggatcctcacgacaaggagaacacaacaccgttggaggcaaggtgtgcattgaccgtcaaggctgtaaccttgggcatgggtggaatc |
246 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| || |||||||||||||||||||||| |
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| T |
32269144 |
ctcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaag-tgtgcaatgaccgtcaaggttgcaaccttgggcatgggtggaatc |
32269046 |
T |
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| Q |
247 |
ggtaaacaggaggtgaatatatctctgcattttgttcatcacttgctcctgctttctcttcttaa |
311 |
Q |
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| T |
32269045 |
ggtaaacaggtagtgaatctatttatgcattttgttcatcacttgctcttgctttctcttattaa |
32268981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 32269235 - 32269167
Alignment:
| Q |
20 |
ctctatcatattcatcttcatctatcatttatctgcctctcaccaatcttacaaatatattcccatgtg |
88 |
Q |
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| T |
32269235 |
ctctatcatattcaacttcatctatcatttatctccctctcaccagtcttacaaatttatacccatgtg |
32269167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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