View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13733_high_20 (Length: 224)
Name: NF13733_high_20
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 17192505 - 17192321
Alignment:
| Q |
16 |
cttctatcacctttcatattaatacaaacctcccctacactactatatatccttttgcattgaaaaaggagaaagatgcggnnnnnnntcacaaaagggg |
115 |
Q |
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| T |
17192505 |
cttctatcacctttcatattaatacaaacctcccctgcactactat----ccttttgcattgaaaaaggacaaagatgcggaaaaaaatcacaaaagggg |
17192410 |
T |
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| Q |
116 |
atatcggatctccatctatccttccaaaaagtactcatactttctctcatctttctaaccacctccgatttgaaccaactcaacccact |
204 |
Q |
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| T |
17192409 |
atatcggatctccatctatccttccaaaaagtactcatactttctctcatctttctaaccacctccgatttgaaccaactcaacccact |
17192321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 28800248 - 28800148
Alignment:
| Q |
104 |
tcacaaaaggggatatcggatctccatctatccttccaaaa---agtactcatactttctctcatctttctaaccacctccgatttgaaccaactcaacc |
200 |
Q |
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| T |
28800248 |
tcacaaaaggggatattggatctccacctatccttccaaaagctagtactcattccgtctctcatccttctaaccacctctgatttaaaccaagtcaacc |
28800149 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
28800148 |
c |
28800148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 4281956 - 4281864
Alignment:
| Q |
104 |
tcacaaaaggggatatcggatctccatctatccttccaaaa---agtactcatactttctctcatctttctaaccacctccgatttgaaccaa |
193 |
Q |
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| T |
4281956 |
tcacaaaagggggtataggatctccatctatcattccaaaaactagtgctcattccatctcccatccttctaaccacctccgagtagaaccaa |
4281864 |
T |
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