View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13733_high_21 (Length: 223)
Name: NF13733_high_21
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 3046161 - 3045973
Alignment:
| Q |
16 |
atgaacattacataatagagttaactaataagtgcatctaaagcactaattaagaagttaaatatatacaagagttagggttcaaatcgtgcacacccca |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3046161 |
atgaacattacataatagagttagctaataaatgcatttaaggcactggttaagaagttaaatatatacaagagttagggttcgaatcgtgcacacccca |
3046062 |
T |
|
| Q |
116 |
acttaaaatatgaatttttaaccattacacgattacttgacctaaaataagtaaacgttagaagatgaaattgattttcttcaagagtg |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3046061 |
ccttaaaatatgaatttctaaccattacacaattacttgacctaaaataagtaaacgttagaagatgaaattgattttcttcaagagtg |
3045973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University