View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13733_high_7 (Length: 393)
Name: NF13733_high_7
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 29643546 - 29643918
Alignment:
| Q |
17 |
aaaattcatgtgtatctagattctagacactacagtagtagacggtgatattgcaattgtttccttggcctattttagaaactttatttcactattttgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29643546 |
aaaattcatgtgtatctagattctagacactacagtagtagacggtgatattgcaattgtttccttggcctattttagaaactttatttcactattttgt |
29643645 |
T |
|
| Q |
117 |
attgaatttaatatggttaattataattttaactattttgattagtcatataattatatgtctatatctgaactataaaattatatgttgtctatatctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643646 |
attgaatttaatatggttaattataattttaactattttgattagtcatataattatatgtctatatctgaactataaaattatatgttgtctatatctt |
29643745 |
T |
|
| Q |
217 |
agtgtacttagcctttggagcatttactatttagtgaattgtataattatactgtggtctgtgaatttgtactcaagacaacttgtccaataccacactg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643746 |
agtgtacttagcctttggagcatttactatttagtgaattgtataattatactgtggtctgtgaatttgtactcaagacaacttgtccaataccacactg |
29643845 |
T |
|
| Q |
317 |
cagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattatctac |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29643846 |
cagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattttctac |
29643918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 29639726 - 29639692
Alignment:
| Q |
80 |
cttggcctattttagaaactttatttcactatttt |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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|
| T |
29639726 |
cttgacctattttagaaactttatttcactatttt |
29639692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 38335015 - 38335380
Alignment:
| Q |
17 |
aaaattcatgtgtatctagattctagacactacagtagtagacggtgatattgcaattgtttccttggcctattttagaaactttatttcactattttgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38335015 |
aaaattcatgtgtatctagattctagacactacagtagtagacggtgatattgcaattgtttccttggcctattttagaaactttatttcactattttgt |
38335114 |
T |
|
| Q |
117 |
attgaatttaatatggttaattataattttaactattttgattagtcatataattatatgtctatatctgaactataaaattatatgttgtctatatctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38335115 |
attgaatttaatatggttaattataattttaactattttgattagtcatataattatatgtctatatctgaactataaaattatatgttgtctatatctt |
38335214 |
T |
|
| Q |
217 |
agtgtacttagcctttggagcatttactatttagtgaattgtataattatactgtggtctgtgaatttgtactcaagacaacttgtccaataccacactg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38335215 |
agtgtacttagcctttggagcatttactattttgtgaattgtataattata-------ctgtgaatttgtactcaagacaacttgtccaataccacactg |
38335307 |
T |
|
| Q |
317 |
cagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattatctac |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
38335308 |
cagaaactacacaatattcattttttactgtcattcatgagtgccattcattttgaagtttagaattttctac |
38335380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 667071 - 667144
Alignment:
| Q |
316 |
gcagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattatctac |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
667071 |
gcagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattttctac |
667144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 27885886 - 27885924
Alignment:
| Q |
316 |
gcagaaactacacaatattcattttttactgccattcat |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27885886 |
gcagaaactacacaatattcattttttactgccattcat |
27885924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 20420231 - 20419861
Alignment:
| Q |
17 |
aaaattcatgtgtatctagattctagacactacagtagtag------acggtgatattgcaattgtttccttggcctattttagaaactttatttcacta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20420231 |
aaaattcatgtgtatctagattctagacactacagtagtagtcgtagacggtgatattgcaattgtttccttggcctattttagaaactttatttcacta |
20420132 |
T |
|
| Q |
111 |
ttttgtattgaatttaatatggttaattataattttaactattttgattagtcatataattatatgtctatatctgaactataaaattatatgttgtcta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20420131 |
ttttgtattgaatttaatatggttaattataattt-aactattttgattagtcatataattatatgtctatatctgaactataaaattatatgttgtcta |
20420033 |
T |
|
| Q |
211 |
tatcttagtgtacttagcctttggagcatttactatttagtgaattgtataattatactgtggtctgtgaatttgtactcaagacaacttgtccaatacc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
20420032 |
tatcttagtgtacttagcctttggagcatttactattttgtgaattgtataattatac-------tgtgaatttgtactcaagacaacttatccaatacc |
20419940 |
T |
|
| Q |
311 |
acactgcagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattatctac |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20419939 |
acactgcagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattttctac |
20419861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 36413100 - 36413138
Alignment:
| Q |
316 |
gcagaaactacacaatattcattttttactgccattcat |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36413100 |
gcagaaactacacaatattcattttttactgccattcat |
36413138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 8768464 - 8768537
Alignment:
| Q |
316 |
gcagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattatctac |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8768464 |
gcagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattttctac |
8768537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 31982728 - 31982779
Alignment:
| Q |
118 |
ttgaatttaatatggttaattataattttaactattttgattagtcatataa |
169 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |||||||||| || ||||||| |
|
|
| T |
31982728 |
ttgattttaatatggtttattataattttacctattttgatcagccatataa |
31982779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 35696581 - 35696626
Alignment:
| Q |
283 |
ttgtactcaagacaacttgtccaataccacactgcagaaactacac |
328 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||||| |||||| |
|
|
| T |
35696581 |
ttgtactcaagacagctggtccaataccacactacagaagctacac |
35696626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 7760511 - 7760471
Alignment:
| Q |
118 |
ttgaatttaatatggttaattataattttaactattttgat |
158 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
7760511 |
ttgattttaatatggttagttataattttacctattttgat |
7760471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 5802692 - 5802765
Alignment:
| Q |
316 |
gcagaaactacacaatattcattttttactgccattcatgagtgccattcattttggagtttagaattatctac |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5802692 |
gcagaaactacacaatattcattttttactgccatttatgagtgccattcattttggagtttagaattttctac |
5802765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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