View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13733_high_8 (Length: 388)
Name: NF13733_high_8
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 32205610 - 32205294
Alignment:
| Q |
1 |
ttagattgttcatctccttcataatgatcttcatcttttcatcaagttaccaacccataaactcataaatttaaaaatctagaattttatcacctctatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32205610 |
ttagattgttcatctccttcataatgatcttcatcttttcatcaagttaacaacccataaactcataaatttaaaaatccagaattttatcacctctatc |
32205511 |
T |
|
| Q |
101 |
attttcattatctttgtattaacaagaaacagaaattgaaagtgaaaaactttatggtatttgatcatctttatcgtagtcacataattctcttaatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
32205510 |
attttcattatctttgtattaacaagaaacagaaattgaaagtgaaaaactttatggtatttgatcgtctttatcatagtcacataattctcttaacata |
32205411 |
T |
|
| Q |
201 |
ttgtgaaccgcgaattggtacttgtgtaccgctttgaggtacttttttgaattggtttacacaaatccccctgcaattcataaaaactgacgaatcagat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
32205410 |
ttgtgaatcgcgaattggtacttgtgtaccgctttgaggtacttttgtgaattggtttacacaaatcctcctgcaattcataaaaactgacgaaccaggt |
32205311 |
T |
|
| Q |
301 |
gaaccgaaataagtagg |
317 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
32205310 |
gaaccaaaacaagtagg |
32205294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 47069704 - 47069751
Alignment:
| Q |
176 |
gtagtcacataattctcttaatatattgtgaaccgcgaattggtactt |
223 |
Q |
| |
|
|||||||||||||||| || |||| |||||||| |||||||||||||| |
|
|
| T |
47069704 |
gtagtcacataattctattgatatgttgtgaactgcgaattggtactt |
47069751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 16723803 - 16723899
Alignment:
| Q |
177 |
tagtcacataattctcttaatatattgtgaaccgcgaattggtacttgtgtaccgctttgaggtacttttttgaattggtttacacaaatccccctg |
273 |
Q |
| |
|
|||||||||||||||||||| || | ||| |||||||||||||||||||||| || | ||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
16723803 |
tagtcacataattctcttaacatgaagcaaactgcgaattggtacttgtgtaccggttcgtggtacttttgtgaattggttcgcacaaattcccctg |
16723899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 10695985 - 10696074
Alignment:
| Q |
177 |
tagtcacataattctcttaatatattgtgaaccgcgaattggtacttgtgtaccgctttgaggtacttttttgaattggtttacacaaat |
266 |
Q |
| |
|
|||||||||||||||||||| || || |||| |||||||||||||| ||||||| || | |||||||| ||||||||| ||||||| |
|
|
| T |
10695985 |
tagtcacataattctcttaacatgatgcgaactgcgaattggtacttatgtaccggttcgtagtacttttgcgaattggttcgcacaaat |
10696074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 8638338 - 8638258
Alignment:
| Q |
177 |
tagtcacataattctcttaatatattgtgaaccgcgaattggtacttgtgtaccgctttgaggtacttttttgaattggtt |
257 |
Q |
| |
|
|||||| ||||||||||| | | ||||||||||| |||||||||||| ||| | |||| ||||||||| |||||||||| |
|
|
| T |
8638338 |
tagtcatataattctcttgacctgttgtgaaccgcaaattggtacttgcgtataggtttgtggtacttttgtgaattggtt |
8638258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 24587136 - 24587182
Alignment:
| Q |
177 |
tagtcacataattctcttaatatattgtgaaccgcgaattggtactt |
223 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||||||| ||||| |
|
|
| T |
24587136 |
tagtcacataattctattaatatgttgtgaactgcgaattgatactt |
24587182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University