View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13733_low_1 (Length: 978)

Name: NF13733_low_1
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13733_low_1
NF13733_low_1
[»] chr1 (4 HSPs)
chr1 (159-968)||(45636178-45636987)
chr1 (19-158)||(45635791-45635930)
chr1 (326-385)||(41339285-41339344)
chr1 (258-384)||(38490602-38490728)
[»] chr8 (4 HSPs)
chr8 (158-962)||(41342328-41343132)
chr8 (258-385)||(14504054-14504181)
chr8 (258-385)||(15992089-15992216)
chr8 (273-354)||(29337605-29337686)
[»] chr3 (9 HSPs)
chr3 (157-963)||(8857804-8858609)
chr3 (176-762)||(13761383-13761968)
chr3 (258-385)||(6007715-6007842)
chr3 (269-354)||(49640946-49641031)
chr3 (258-385)||(17788485-17788612)
chr3 (513-594)||(36789079-36789160)
chr3 (484-572)||(51109058-51109146)
chr3 (157-234)||(8857686-8857763)
chr3 (329-386)||(34933552-34933609)
[»] chr4 (3 HSPs)
chr4 (258-385)||(30857695-30857822)
chr4 (258-385)||(55225945-55226072)
chr4 (316-366)||(34216364-34216414)
[»] chr7 (2 HSPs)
chr7 (269-354)||(17244196-17244281)
chr7 (314-381)||(13016664-13016731)
[»] chr5 (1 HSPs)
chr5 (258-385)||(22290709-22290836)
[»] chr6 (4 HSPs)
chr6 (269-366)||(16344122-16344219)
chr6 (426-570)||(21700693-21700837)
chr6 (269-366)||(16319932-16320029)
chr6 (326-385)||(20928498-20928557)
[»] chr2 (1 HSPs)
chr2 (269-354)||(44884621-44884706)
[»] scaffold0252 (1 HSPs)
scaffold0252 (317-354)||(6294-6331)


Alignment Details
Target: chr1 (Bit Score: 686; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 159 - 968
Target Start/End: Original strand, 45636178 - 45636987
Alignment:
Q  159 actctataaataacattatgggcgttcaggctgttttaggcacgggcaagtatttgagtttaccatcgatgattggcagaaaccgcacaactgttttctc 258  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||    
T  45636178 actctataactaacattatgggcgttcgggctgttttaggcacgggcaagtatttgggtttaccatcgatgattggcagaaaccacacggctgttttctc 45636277  T
Q  259 ttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagcc 358  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45636278 ttacgttaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgcctctctaaagcgggtcgtgaggttatgataaaatccgttttgcaagcc 45636377  T
Q  359 attccgtcttatatcatgagtatctttatgttgccgtcgaatattatttctactattgagaagatgttgaatgctttttggtagggtcacggtgggtcta 458  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  45636378 attccgtcttatatcatgattatctttatgctgtcgtcgaatattatttttactattgagaagatgatgaatgctttttggtggggtcacggtgggtcta 45636477  T
Q  459 ataatcgaggcattcactggttatcttgggagaagctctcgatgcacaagacaaatggaggtatgagtttcaaagaccttaccgctttcaacctggcaat 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  45636478 ataatcgaggcattcactggttatcttgggagaagctctcgatgcacaagacaaatggaggtatgggtttcaaagaccttaccgctttcaacctagcaat 45636577  T
Q  559 gcttggtaaacaagcatggaagtttatgactgaacctcatactttggcttcccgcatctttaaggcgcactattttcctaataatacttttctgacagca 658  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| ||    
T  45636578 gcttggtaaacaagcatggaagtttatgaccgaacctcatactttggcttcccgcatctttaaggcacgctattttcctaataatacttttccgacaaca 45636677  T
Q  659 tctttgggacataatccaagctacgtgtggcgaagtattttgaaagctcgtttcattgttagaggaggatctcgttggtgtatcgggtcaggaagttcca 758  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||| |||||||    
T  45636678 tctttgggacataatccaagctacgcgtggtgaagtattttgaaagctcatttcattgttagaggaggatcccattggtgtatcgagtcaggcagttcca 45636777  T
Q  759 tccctattattgatgaactgtggttaaggaatggaactaaacttgctagtaatattgccaatgcgcatctgttgaggaactttggagtagatagcttaat 858  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45636778 tccctattattgatgaaccgtggttaaggaatggaactaaacttgctagtaatattgccaatgtgcatctgttgaggaactttggagtagatagcttaat 45636877  T
Q  859 tcacactcattctaagacgtggaacgtggaggtcattcatcaagtgtttgatgatgcatcggctgcatccattttacaaactttcttgtttgagcaagtg 958  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45636878 tcacactcattctaagacgtggaacgtggaggtcattcatcaagtgtttgatgatgcatcggctgcatccattttacaaacttccttgtttgagcaagtg 45636977  T
Q  959 actgatgatg 968  Q
    ||||||||||    
T  45636978 actgatgatg 45636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 45635791 - 45635930
Alignment:
Q  19 agtggatgacgatgtgtgtcgaaacggtggaatattctgtgttgcttaataatgagttgattgatccaatcattccgggacggggattgcgtcaagggga 118  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45635791 agtggatgacgatatgtgtcgaaacggtggactattctgtgttggttaataatgagttgattggtccaatcattccgggacggggattgcgtcaagggga 45635890  T
Q  119 ccccctgtctccctatttgttcattatttgtgcggagggc 158  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  45635891 ccccctgtctccctatttgttcattatttgcgcggagggc 45635930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 41339285 - 41339344
Alignment:
Q  326 cgtgaggttatgataaaatccgttttgcaagccattccgtcttatatcatgagtatcttt 385  Q
    ||||||||||||||||||||||| ||||| || |||| ||| ||||| ||||||||||||    
T  41339285 cgtgaggttatgataaaatccgtcttgcaggctattctgtcatatataatgagtatcttt 41339344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 38490728 - 38490602
Alignment:
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    |||| ||||| ||||| |||||||| |  || ||| ||||||| || || || | ||||||||| ||||| || ||||||||||| || ||| | |||||    
T  38490728 cttatattaaggatcgtgtgtggcaaatgattaattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttcttcaagc 38490629  T
Q  358 cattccgtcttatatcatgagtatctt 384  Q
    |||||| |||||  |||||||| ||||    
T  38490628 cattccttcttacgtcatgagtctctt 38490602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 158 - 962
Target Start/End: Original strand, 41342328 - 41343132
Alignment:
Q  158 cactctataaataacattatgggcgttcaggctgttttaggcacgggcaagtatttgagtttaccatcgatgattggcagaaaccgcacaactgttttct 257  Q
    ||||| |||| ||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||||| || |||||| |||||||||    
T  41342328 cactccataactaacattatgggcgttcgggctgtgttaggtacgggcaagtatttgggtttaccatcgatgattggcaggaatcgcacagctgttttct 41342427  T
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  41342428 cttatgttaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgcctctctaaagcgggtcgtgaggttatgataaaatccgttttgcaatc 41342527  T
Q  358 cattccgtcttatatcatgagtatctttatgttgccgtcgaatattatttctactattgagaagatgttgaatgctttttggtagggtcacggtgggtct 457  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||| |||| |||||||||| |||||| |||||||||    
T  41342528 cattccgtcttatattatgagtatctttatgctgccgccgaatatcattactactattgagaaaatgatgaacgctttttggtggggtcatggtgggtct 41342627  T
Q  458 aataatcgaggcattcactggttatcttgggagaagctctcgatgcacaagacaaatggaggtatgagtttcaaagaccttaccgctttcaacctggcaa 557  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||||| |    
T  41342628 aataatcgaggcattcattggttatcttgggagaagctctcgatgcacaagacaaatggaggtatgggcttcaaagaccttacagcgttcaatctggcta 41342727  T
Q  558 tgcttggtaaacaagcatggaagtttatgactgaacctcatactttggcttcccgcatctttaaggcgcactattttcctaataatacttttctgacagc 657  Q
    ||||||||||||| ||||||||| | |||||||||||||||||| ||| |||||||||||||||||| |  |||||||||||||| ||||||||||||||    
T  41342728 tgcttggtaaacaggcatggaagctcatgactgaacctcatactctggtttcccgcatctttaaggcacgttattttcctaataacacttttctgacagc 41342827  T
Q  658 atctttgggacataatccaagctacgtgtggcgaagtattttgaaagctcgtttcattgttagaggaggatctcgttggtgtatcgggtcaggaagttcc 757  Q
     |||||||| ||||||||||| |||| |||||| ||||| ||||||||||| || |||||||||||||| || |||||||||||||||||||| ||||||    
T  41342828 ttctttgggtcataatccaagttacgcgtggcgcagtatcttgaaagctcggtttattgttagaggaggttcccgttggtgtatcgggtcaggcagttcc 41342927  T
Q  758 atccctattattgatgaactgtggttaaggaatggaactaaacttgctagtaatattgccaatgcgcatctgttgaggaactttggagtagatagcttaa 857  Q
    ||| ||||  ||||||||| ||||||| | ||||| |||||||||| | |||| || | |||||||||| ||||||||||| || |||| ||||||||||    
T  41342928 atctctatacttgatgaaccgtggttaggtaatggcactaaacttgatggtaacatcgacaatgcgcatatgttgaggaaccttagagttgatagcttaa 41343027  T
Q  858 ttcacactcattctaagacgtggaacgtggaggtcattcatcaagtgtttgatgatgcatcggctgcatccattttacaaactttcttgtttgagcaagt 957  Q
    | |||  |||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| || |||||||||||||  ||| ||||||||||    
T  41343028 tccacgatcattctaagacgtggaacgcggaggtcattcaccaggtgtttgatgatgcatcggctgcctctattttacaaacttcattggttgagcaagt 41343127  T
Q  958 gactg 962  Q
    |||||    
T  41343128 gactg 41343132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 14504054 - 14504181
Alignment:
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    ||||||| || ||||| || ||||||||||||||| | |||||  | || || | ||||||||| ||||| ||||| ||||||||||| |||||||| ||    
T  14504054 cttacatcaaggatcgtgtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgttttgcaggc 14504153  T
Q  358 cattccgtcttatatcatgagtatcttt 385  Q
     ||||| |||||| | ||||||||||||    
T  14504154 tattccttcttatgtgatgagtatcttt 14504181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 258 - 385
Target Start/End: Complemental strand, 15992216 - 15992089
Alignment:
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    ||||||| || ||||| || ||||||||||||||| | |||||  | || || | ||||||||  ||||| ||||| ||||||||||| |||||||| ||    
T  15992216 cttacatcaaggatcgtgtttggcagaaaatcaattcctggagttgtaagtgtctctctaaagtaggtcgagaggtcatgataaaatctgttttgcaggc 15992117  T
Q  358 cattccgtcttatatcatgagtatcttt 385  Q
     ||||| ||||||   ||||||||||||    
T  15992116 tattccttcttatgcgatgagtatcttt 15992089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 29337686 - 29337605
Alignment:
Q  273 gcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgca 354  Q
    |||||||||||||||| ||| |||||||  | || || | ||||||||  ||||||||||||||||||||||  ||||||||    
T  29337686 gcgtgtggcagaaaattaattcttggagtggtaagtgtctctctaaagtaggtcgtgaggttatgataaaatttgttttgca 29337605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 157 - 963
Target Start/End: Original strand, 8857804 - 8858609
Alignment:
Q  157 gcactctataaataacattatgggcgttcaggctgttttaggcacgggcaagtatttgagtttaccatcgatgattggcagaaaccgcacaactgttttc 256  Q
    ||||||||||| |||||| |||| | |||||| ||||||||| ||  | |||||| || ||||||| ||||||||||| || ||  ||| | ||||||||    
T  8857804 gcactctataactaacataatggacattcaggttgttttaggtaccagtaagtatctgggtttaccttcgatgattggtaggaattgcagagctgttttc 8857903  T
Q  257 tcttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaag 356  Q
    |||||| ||||||||||  ||||| ||||||| ||||||||||| || ||||| |  ||||||| ||||| |||||||||||| ||||||||| ||||||    
T  8857904 tcttacgttaaagatcgtctgtggtagaaaattaatacttggagtagtaaatgtctttctaaagtgggtcatgaggttatgattaaatccgttctgcaag 8858003  T
Q  357 ccattccgtcttatatcatgagtatctttatgttgccgtcgaatattatttctactattgagaagatgttgaatgctttttggtagggtcacggtgggtc 456  Q
    |||  | |||||||||||||||||| |||||| ||  ||||||||||||| ||||||||||||| ||| |||| ||||||| || ||||||| |||| ||    
T  8858004 ccaccctgtcttatatcatgagtatttttatgctgtagtcgaatattatt-ctactattgagaaaatgatgaacgcttttttgtggggtcacagtggttc 8858102  T
Q  457 taataatcgaggcattcactggttatcttgggagaagctctcgatgcacaagacaaatggaggtatgagtttcaaagaccttaccgctttcaacctggca 556  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||||||||||      
T  8858103 taataatcgaggtattaactggttatcatgggagaagctctcgatgcacaagaccaatggaggtatgggtttcaaagacctcactgctttcaacctggtg 8858202  T
Q  557 atgcttggtaaacaagcatggaagtttatgactgaacctcatactttggcttcccgcatctttaaggcgcactattttcctaataatacttttctgacag 656  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||  ||| | || |||||||||   |||||||||||||||| ||||||| |||    
T  8858203 atgcttggtaaataggcagggaagtttatgactgaacctcatactttggtctcctgtatttttaaggcgtggtattttcctaataataattttctgtcag 8858302  T
Q  657 catctttgggacataatccaagctacgtgtggcgaagtattttgaaagctcgtttcattgttagaggaggatctcgttggtgtatcgggtcaggaagttc 756  Q
    |||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||  | ||    
T  8858303 catctttgggccataatccaagctacgtatgacggagtattttgaaagctcgtttcattgttagaggtggatctcggtggtgcattgggtcaggttgctc 8858402  T
Q  757 catccctattattgatgaactgtggttaaggaatggaactaaacttgctagtaatattgccaatgcgcatctgttgaggaactttggagtagatagctta 856  Q
    |||| |||| ||||||||||  |||||| | ||||||||||||||||  | ||||||||||||||||||||||||||||| |||||| |||||||| |||    
T  8858403 catctctatcattgatgaaccatggttaggtaatggaactaaacttgacactaatattgccaatgcgcatctgttgaggagctttggggtagatagttta 8858502  T
Q  857 attcacactcattctaagacgtggaacgtggaggtcattcatcaagtgtttgatgatgcatcggctgcatccattttacaaactttcttgtttgagcaag 956  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||  ||||| | ||| |||||||||||| |||||||  |||| |||||||||    
T  8858503 attcacactcattctaagacgtggaacgtagaggtcattcaccaagtgttcaatgatacctcgactgcatccatttcacaaactcccttgattgagcaag 8858602  T
Q  957 tgactga 963  Q
    |||||||    
T  8858603 tgactga 8858609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 176 - 762
Target Start/End: Complemental strand, 13761968 - 13761383
Alignment:
Q  176 atgggcgttcaggctgttttaggcacgggcaagtatttgagtttaccatcgatgattggcagaaaccgcacaactgttttctcttacattaaagatcgcg 275  Q
    ||||| |||||||||||| | ||||| || |||||| |  | ||||| ||||||||||| || || || ||| |||||||| ||||  |||| |||||||    
T  13761968 atgggtgttcaggctgttcttggcacaggtaagtatctaggcttaccctcgatgattggtaggaatcgtacatctgttttcgcttatgttaaggatcgcg 13761869  T
Q  276 tgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagccattccgtcttatatcat 375  Q
    ||||||| ||||| || || ||||| |||||||| |  || |||||||| || ||||||||||| ||||| ||  |||| || || || || ||| | ||    
T  13761868 tgtggcataaaataaacacatggagtagcaaatgtctttcaaaagcgggacgggaggttatgattaaatctgtactgcatgcaatcccatcgtatgttat 13761769  T
Q  376 gagtatctttatgttgccgtcgaatattatttctactattgagaagatgttgaatgctttttggtagggtcacggtgggtctaataatcgaggcattcac 475  Q
    |||||| ||  || ||||  |   ||||||||| || || ||||||||||||||| | ||||||| | | || |||||||| | |   || || |||||     
T  13761768 gagtat-ttcttgctgcccacttctattatttcgaccatagagaagatgttgaattcgttttggtggagccatggtgggtcgagtggccggggtattcat 13761670  T
Q  476 tggttatcttgggagaagctctcgatgcacaagacaaatggaggtatgagtttcaaagaccttaccgctttcaacctggcaatgcttggtaaacaagcat 575  Q
    ||| |||||||||||||| | || ||||| || ||  |||| |  ||| |||| || ||||| || || || ||| | || |||||||| ||||| || |    
T  13761669 tggctatcttgggagaagttgtctatgcataaaacgcatggtgtcatgggttttaaggacctcactgcatttaacttagctatgcttggcaaacaggctt 13761570  T
Q  576 ggaagtttatgactgaacctcatactttggcttcccgcatctttaaggcgcactattttcctaataatacttttctgacagcatctttgggacataatcc 675  Q
    ||||||||||  | || |||| | | |||| ||| |  || || ||||||| |||||| | ||| ||||  ||| || | || |||||||| ||||| ||    
T  13761569 ggaagtttatatcagagcctctttcgttggtttctcagattttcaaggcgcgctatttccttaacaataactttatgtctgcttctttggggcataaccc 13761470  T
Q  676 aagctacgtgtggcgaagtattttgaaagctcgtttcattgttagaggaggatctcgttggtgtatcgggtcaggaagttccatccc 762  Q
    ||| ||||| |||||||||||||| ||||| ||||| |||||| |||| ||  |||| ||| |||| |||||||| | |||||||||    
T  13761469 aagttacgtttggcgaagtattttaaaagcgcgttttattgttcgagggggggctcggtggcgtattgggtcaggtacttccatccc 13761383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 385
Target Start/End: Complemental strand, 6007842 - 6007715
Alignment:
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    ||||||| || ||||| || ||||||| ||||||| | |||||  | || || | ||||||||| ||||| ||||||||||||||||| |||||||| ||    
T  6007842 cttacatcaaggatcgtgtttggcagagaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggttatgataaaatctgttttgcaggc 6007743  T
Q  358 cattccgtcttatatcatgagtatcttt 385  Q
     ||||| |||||| | ||||||||||||    
T  6007742 tattccttcttatgtgatgagtatcttt 6007715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 49640946 - 49641031
Alignment:
Q  269 gatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgca 354  Q
    |||||||||||||||||||| ||| |||||||  | || || | ||||||||| ||||||||||||||||||||||  ||||||||    
T  49640946 gatcgcgtgtggcagaaaattaattcttggagtggtaagtgtctctctaaagcaggtcgtgaggttatgataaaatttgttttgca 49641031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 17788485 - 17788612
Alignment:
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    ||||||| || ||||| || ||||||||||||||| | |||||  | || || | ||||||||| ||||| ||||| ||||||||||| | |||||| ||    
T  17788485 cttacatcaaggatcgtgtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgctttgcaggc 17788584  T
Q  358 cattccgtcttatatcatgagtatcttt 385  Q
     ||||| |||||| | ||||||||||||    
T  17788585 tattccttcttatgtgatgagtatcttt 17788612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 594
Target Start/End: Original strand, 36789079 - 36789160
Alignment:
Q  513 atggaggtatgagtttcaaagaccttaccgctttcaacctggcaatgcttggtaaacaagcatggaagtttatgactgaacc 594  Q
    ||||||||||||||||||||||||| || ||||||||  |||| ||| | |||||||| |  ||||||||||| || |||||    
T  36789079 atggaggtatgagtttcaaagacctgactgctttcaatttggctatgttgggtaaacagggttggaagtttataacagaacc 36789160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 484 - 572
Target Start/End: Original strand, 51109058 - 51109146
Alignment:
Q  484 ttgggagaagctctcgatgcacaagacaaatggaggtatgagtttcaaagaccttaccgctttcaacctggcaatgcttggtaaacaag 572  Q
    ||||||||||||||| ||||| || |   ||||||||||| | ||||||||||| || ||||||||| | |||||||| ||||| ||||    
T  51109058 ttgggagaagctctctatgcataaaaatcatggaggtatgggcttcaaagacctcactgctttcaacttagcaatgctcggtaagcaag 51109146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 8857686 - 8857763
Alignment:
Q  157 gcactctataaataacattatgggcgttcaggctgttttaggcacgggcaagtatttgagtttaccatcgatgattgg 234  Q
    ||||||||||| |||||| |||| | |||||| ||||||||| ||  | |||||| || ||||||| |||||||||||    
T  8857686 gcactctataactaacataatggacattcaggttgttttaggtaccagtaagtatctgggtttaccttcgatgattgg 8857763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 34933552 - 34933609
Alignment:
Q  329 gaggttatgataaaatccgttttgcaagccattccgtcttatatcatgagtatcttta 386  Q
    ||||||||||| ||||| ||| | ||||| ||||| |||||| |||||||||||||||    
T  34933552 gaggttatgatcaaatctgttcttcaagctattccatcttatgtcatgagtatcttta 34933609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 30857695 - 30857822
Alignment:
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    ||||||| || ||||| || ||||||| ||||||| | |||||  | || || | ||||||||| ||||| ||||||||||||||||| |||||||| ||    
T  30857695 cttacatcaaggatcgtgtttggcagagaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggttatgataaaatctgttttgcaggc 30857794  T
Q  358 cattccgtcttatatcatgagtatcttt 385  Q
     ||||| |||||| | ||||||||||||    
T  30857795 tattccttcttatgtgatgagtatcttt 30857822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 55225945 - 55226072
Alignment:
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    ||||||| || ||||| || ||||||||||||||| | |||||  | || || | ||||||||| ||||| ||||| ||||||||||| |||| ||| ||    
T  55225945 cttacatcaaggatcgtgtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgtttggcaggc 55226044  T
Q  358 cattccgtcttatatcatgagtatcttt 385  Q
     ||||| |||||| | ||||||||||||    
T  55226045 tattccttcttatgtgatgagtatcttt 55226072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 34216414 - 34216364
Alignment:
Q  316 taaagcgggtcgtgaggttatgataaaatccgttttgcaagccattccgtc 366  Q
    ||||||||| ||||| || ||||| ||||||||||||||||||||||||||    
T  34216414 taaagcgggacgtgaagtcatgattaaatccgttttgcaagccattccgtc 34216364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 17244281 - 17244196
Alignment:
Q  269 gatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgca 354  Q
    ||||| |||||||||||||| ||| |||||||  | || || | ||||||||| ||||||||||||||||||||||| ||||||||    
T  17244281 gatcgggtgtggcagaaaattaattcttggagtggtaagtgtctctctaaagcaggtcgtgaggttatgataaaatctgttttgca 17244196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 13016731 - 13016664
Alignment:
Q  314 tctaaagcgggtcgtgaggttatgataaaatccgttttgcaagccattccgtcttatatcatgagtat 381  Q
    |||||||  ||||| ||||||||||||||||| |||||||| || ||||| |||||| | ||||||||    
T  13016731 tctaaagtaggtcgcgaggttatgataaaatctgttttgcaggcaattccttcttatgttatgagtat 13016664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 22290709 - 22290836
Alignment:
Q  258 cttacattaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagc 357  Q
    ||||||| || ||||| || ||| ||||||||||| | |||||  | || || | ||||||||| ||||| ||||| ||||||||||| |||||||| ||    
T  22290709 cttacatcaaggatcgtgtttggtagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgttttgcaggc 22290808  T
Q  358 cattccgtcttatatcatgagtatcttt 385  Q
     ||||| |||||| | ||||||||||||    
T  22290809 tattccttcttatgtgatgagtatcttt 22290836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 16344122 - 16344219
Alignment:
Q  269 gatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagccattccgtc 366  Q
    ||||| |||||||| ||||||||| | ||||| || ||||||   ||||||| ||| ||||| || | ||| ||||||||||||||||||||||||||    
T  16344122 gatcgtgtgtggcaaaaaatcaattcgtggagtagtaaatgcttgtctaaagagggacgtgaagtcaagattaaatccgttttgcaagccattccgtc 16344219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 570
Target Start/End: Complemental strand, 21700837 - 21700693
Alignment:
Q  426 tgaatgctttttggtagggtcacggtgggtctaataatcgaggcattcactggttatcttgggagaagctctcgatgcacaagacaaatggaggtatgag 525  Q
    ||||||||||||||| |||||| || |||   |||||||| || ||||| ||||| |||||||||||| | || |||||||| ||  ||||||| ||| |    
T  21700837 tgaatgctttttggtggggtcatggaggggagaataatcgtggtattcattggttgtcttgggagaagttgtctatgcacaaaactcatggagggatggg 21700738  T
Q  526 tttcaaagaccttaccgctttcaacctggcaatgcttggtaaaca 570  Q
    ||| ||||||||  | || ||||| || || |||||||| |||||    
T  21700737 ttttaaagacctatcggcgttcaatcttgctatgcttggaaaaca 21700693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 16319932 - 16320029
Alignment:
Q  269 gatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgcaagccattccgtc 366  Q
    ||||| |||||||| |||||||||   ||||| || ||||||   ||||||||||| ||||| || ||||| ||||| ||||||||||||||| ||||    
T  16319932 gatcgtgtgtggcaaaaaatcaatttgtggagtagtaaatgcttatctaaagcgggacgtgaagtcatgattaaatctgttttgcaagccatttcgtc 16320029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 20928498 - 20928557
Alignment:
Q  326 cgtgaggttatgataaaatccgttttgcaagccattccgtcttatatcatgagtatcttt 385  Q
    ||||||||||||||||||||||| ||| | || |||| ||| ||||| ||||||||||||    
T  20928498 cgtgaggttatgataaaatccgtcttgaaggctattctgtcatatataatgagtatcttt 20928557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 44884621 - 44884706
Alignment:
Q  269 gatcgcgtgtggcagaaaatcaatacttggagcagcaaatgccactctaaagcgggtcgtgaggttatgataaaatccgttttgca 354  Q
    |||||||||||||||||||| |||  ||||||  | || || | ||||||||| |||| |||||||||||||||||| ||||||||    
T  44884621 gatcgcgtgtggcagaaaattaattattggagtggtaagtgtctctctaaagcaggtcatgaggttatgataaaatctgttttgca 44884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 6294 - 6331
Alignment:
Q  317 aaagcgggtcgtgaggttatgataaaatccgttttgca 354  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  6294 aaagcgggtcgtgaggtaatgataaaatctgttttgca 6331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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