View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13733_low_10 (Length: 335)
Name: NF13733_low_10
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_low_10 |
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| [»] scaffold0067 (1 HSPs) |
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| [»] scaffold0779 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 31036458 - 31036154
Alignment:
| Q |
14 |
tacttctgctagtgaagattttgttttaatcaactatgttgattctagaaagttcaaaagcaataactctggaaaatcatactctcaaggatcaaattcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31036458 |
tacttctgctagtgaagattttgttttaatcaactatgttgattctagaaagttcaaaagcaataactctggaaaatcatactctcgaggatcaaattcc |
31036359 |
T |
|
| Q |
114 |
aagaatggtgtttgtgtttgcactttttgtggtaggaacaatcacactgttgaaacatgttggaagaaacatggagttccaccacaccttcagaggaatt |
213 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036358 |
aagaatggtgtttgtgtatgcactttttttggtaggaacaatcacactgttgaaacatgttggaagaaacatggagttccaccacaccttcagaggaatt |
31036259 |
T |
|
| Q |
214 |
ataactcagcatcttctaatcatattgcaaaggaggatgctaatcctgtagtaaactctccagcatgtgttgatcataaagttagtgtaccgttaatcac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31036258 |
ataactcagcatcttctaatcatattgcaaaggaggatgctaatcctgtagtaaactctccagcatgtgttgatcataaagttagtgtaccgtcaatcac |
31036159 |
T |
|
| Q |
314 |
acatg |
318 |
Q |
| |
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||||| |
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| T |
31036158 |
acatg |
31036154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 25577153 - 25577093
Alignment:
| Q |
153 |
aatcacactgttgaaacatgttggaagaaacatggagttccaccacaccttcagaggaatt |
213 |
Q |
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||||||||| | ||||| ||||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
25577153 |
aatcacactttggaaacttgttggaagaaacatggcattccaccacatcttcagaagaatt |
25577093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 13385 - 13098
Alignment:
| Q |
16 |
cttctgctagtgaagattttgttttaatcaactatgttgattctagaaagttcaaaagcaataactctggaaaatcatactctcaaggatcaaattccaa |
115 |
Q |
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||||| ||| |||||||||||| ||||||||||||| |||||||| |||||| ||| ||||| | | |||||||||||| |||||||||||||||||||| |
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| T |
13385 |
cttctcctaatgaagattttgtcttaatcaactatgctgattctacaaagtttaaaggcaattattatggaaaatcatattctcaaggatcaaattccaa |
13286 |
T |
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| Q |
116 |
gaatggtgtttgtgtttgcactttttgtggtaggaacaatcacactgttgaaacatgttggaagaaacatggagttccaccacaccttcagaggaattat |
215 |
Q |
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||| |||| |||| ||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||| |
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| T |
13285 |
taattgtgtc-gtgtatgcacctttcgtggtaggaacaatcacaaagttgagacatgttggaagaaacatgaagttccaccacatcttcagaagaattat |
13187 |
T |
|
| Q |
216 |
aactcagcatcttctaatcatattgcaaaggaggatgctaatcctgtagtaaactctccagcatgtgttgatcataaagttagtgtacc |
304 |
Q |
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|| ||||||||| ||| |||| |||||||||||| | ||||| ||||| |||||| ||| |||| ||||||||||||| |||||||| |
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| T |
13186 |
aattcagcatctactattcattttgcaaaggagggcgttaatcatgtagaaaactccccatcatgagttgatcataaagccagtgtacc |
13098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 2724 - 2839
Alignment:
| Q |
98 |
tcaaggatcaaattccaagaatggtgtttgtgtttgcactttttgtggtaggaacaatcacactgttgaaacatgttggaagaaacatggagttccacca |
197 |
Q |
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||||||||| |||||||||||||| |||| || ||||| ||||| || | ||||||||| | ||||| ||||||||||||||||| |||||||| |
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| T |
2724 |
tcaaggatccaattccaagaatggatcacgtgtgtgtactttctgtggaagaagtaatcacactttggaaacttgttggaagaaacatggcattccacca |
2823 |
T |
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| Q |
198 |
caccttcagaggaatt |
213 |
Q |
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|| ||||||| ||||| |
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| T |
2824 |
catcttcagaagaatt |
2839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 18502773 - 18502658
Alignment:
| Q |
98 |
tcaaggatcaaattccaagaatggtgtttgtgtttgcactttttgtggtaggaacaatcacactgttgaaacatgttggaagaaacatggagttccacca |
197 |
Q |
| |
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||||||||| |||||||||||||| |||| || ||||| ||||| || | ||||||||| | ||||| ||||||||||||||||| |||||||| |
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| T |
18502773 |
tcaaggatccaattccaagaatggatcacgtgtgtgtactttctgtggaagaagtaatcacactttggaaacttgttggaagaaacatggcattccacca |
18502674 |
T |
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| Q |
198 |
caccttcagaggaatt |
213 |
Q |
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|| ||||||| ||||| |
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| T |
18502673 |
catcttcagaagaatt |
18502658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 26362778 - 26362718
Alignment:
| Q |
153 |
aatcacactgttgaaacatgttggaagaaacatggagttccaccacaccttcagaggaatt |
213 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
26362778 |
aatcacactttggaaacttgttggaagaaacatggcattccaccacatcttcagaagaatt |
26362718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 2985065 - 2985181
Alignment:
| Q |
83 |
tggaaaatcatactctcaaggatcaaattccaagaatggtgtttgtgtttgcactttttgtggtaggaacaatcacactgttgaaacatgttggaagaaa |
182 |
Q |
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|||||||||||| |||||||| | |||| |||||||||||| ||| || ||||| ||||| || | |||||||||| ||||| |||| ||| || |
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| T |
2985065 |
tggaaaatcatattctcaaggttgcaatttcaagaatggtgtgcatgtatgtactttctgtggaagaagtgatcacactgtggaaacttgttcgaaaaag |
2985164 |
T |
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| Q |
183 |
catggagttccaccaca |
199 |
Q |
| |
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||||||||||||||||| |
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| T |
2985165 |
catggagttccaccaca |
2985181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 22465117 - 22465008
Alignment:
| Q |
97 |
ctcaaggatcaaattccaagaatggtgtttgtgtttgcactttttgtggtaggaacaatcacactgttgaaacatgttggaagaaacatggagttccacc |
196 |
Q |
| |
|
||||||| || ||||||||||||| || |||| ||||| |||||||| ||||| ||||| | |||||||||||| | |||| | |||||||||||| |
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| T |
22465117 |
ctcaaggttctaattccaagaatgtcattcgtgtatgcaccttttgtgggaggaataatcatattgttgaaacatgctatgagaagcttggagttccacc |
22465018 |
T |
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| Q |
197 |
acaccttcag |
206 |
Q |
| |
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|| |||||| |
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|
| T |
22465017 |
tcatcttcag |
22465008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 19474010 - 19473913
Alignment:
| Q |
110 |
ttccaagaatggtgtttgtgtttgcactttttgtggtaggaacaatcacactgttgaaacatgttggaagaaacatggagttccaccacaccttcaga |
207 |
Q |
| |
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||||||||||||||| |||| || ||||| ||| || ||||| |||||||| |||||||| |||||||| |||||| | ||||| || ||||||| |
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| T |
19474010 |
ttccaagaatggtgtacgtgtatgtactttctgtaacagaaacaaccacactgtggaaacatgctggaagaagcatggaataccacctcatcttcaga |
19473913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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