View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13733_low_12 (Length: 324)

Name: NF13733_low_12
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13733_low_12
NF13733_low_12
[»] chr3 (20 HSPs)
chr3 (18-324)||(19581711-19582048)
chr3 (105-259)||(18478689-18478843)
chr3 (70-249)||(19594049-19594211)
chr3 (89-316)||(19539509-19539731)
chr3 (184-303)||(19604254-19604365)
chr3 (189-317)||(19549671-19549792)
chr3 (184-317)||(19654050-19654194)
chr3 (79-315)||(32150345-32150574)
chr3 (194-260)||(19557725-19557790)
chr3 (104-161)||(19626624-19626681)
chr3 (211-297)||(18478868-18478964)
chr3 (263-317)||(19626559-19626613)
chr3 (120-165)||(19557802-19557847)
chr3 (29-72)||(19557908-19557951)
chr3 (114-166)||(19654195-19654248)
chr3 (114-161)||(19604371-19604419)
chr3 (153-251)||(19617903-19618000)
chr3 (89-143)||(19564004-19564059)
chr3 (27-72)||(32150242-32150287)
chr3 (274-314)||(19594014-19594054)
[»] chr6 (1 HSPs)
chr6 (181-252)||(18025650-18025716)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 19582048 - 19581711
Alignment:
Q  18 atttcaagatatattattcaaaggaaaatgctcattgatacaagacgaaaacacattatt----------------ctgtgtttaaattgcacaagtcca 101  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||                |||||||||| |||||| |||| |    
T  19582048 atttcatgatatattattaaaaggaaaatgctcattgatacaagacgaaaacacattattggtccaacacattattctgtgtttaagttgcacgagtcta 19581949  T
Q  102 tc-tctttcttgatttcacattgagcttggccacatactttcaagttctccatttattcttctgccaagaagcacaatgtatacatacttgatatatatg 200  Q
    || |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  19581948 tcctctttctttatttcatattgagcttggccacatactttcaagttctccatttattcttctgccaagaatcacaatgtatacatacttgatatatata 19581849  T
Q  201 tttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatct--------------atagatataaatatttataatgat 286  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||| ||    
T  19581848 cttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatagttaaacatatatagatataaatatttataataat 19581749  T
Q  287 gtaatttatttgattacacacagcaacaagaatttccc 324  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19581748 gtaatttatttcattacacacagcaacaagaatttccc 19581711  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 18478689 - 18478843
Alignment:
Q  105 ctttcttgatttcacattgagcttggccacatactttcaagttctccatttattcttctgccaagaagcacaatgtatacatacttgatatatatgtttc 204  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |||    
T  18478689 ctttctttatttcatattgagcttggccacatactttcaagttctccatttattcttctgccaagaatcacaatgcatacattcttgatatatatgcttc 18478788  T
Q  205 aaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgcca 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18478789 aaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgcca 18478843  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 249
Target Start/End: Complemental strand, 19594211 - 19594049
Alignment:
Q  70 acattattctgtgtttaaattgcacaagtccatctctttcttgatttcacattgagcttggccacatactttcaagttctccatttattcttctgccaag 169  Q
    |||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||      
T  19594211 acattattctgtgtttaagttgcacaagtctatctctttctttatttcacattgagcttggccacatactttcaagttctccacttattcttatgcca-- 19594114  T
Q  170 aagcacaatgtatacatacttgatatatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttattta 249  Q
                   |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19594113 ---------------atacttgatatatattcttcaaacatatataaataaaagctttggaggaagatgtttcttattta 19594049  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 19539731 - 19539509
Alignment:
Q  89 ttgcacaagtccatctctttcttgatttcacattgagcttggccacatactttcaagttctccatttattcttctgccaagaagcacaatgtatacatac 188  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  19539731 ttgcacaagtctatctctttctttatttcatattgagcttggccacataatttcaagttctccatttattcttctaccaagaatcacaaagtatacatac 19539632  T
Q  189 ttgatatatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatct--------atagatataaatatttat 280  Q
    |||||||             |||||||||| ||||||||||||  | ||||||||||||||||| ||||  |||        ||| ||||||||||||||    
T  19539631 ttgatat-------------atatataaatcaaagctttggagagagatgtttcttatttagttgatgctgtctttagtaaaatatatataaatatttat 19539545  T
Q  281 aatgatgtaatttatttgattacacacagcaacaag 316  Q
    ||| ||||||||||||| |||||| |||||||||||    
T  19539544 aataatgtaatttatttcattacatacagcaacaag 19539509  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 184 - 303
Target Start/End: Complemental strand, 19604365 - 19604254
Alignment:
Q  184 catacttgatatatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatagatataaatatttataat 283  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||  |        |||||||||||||||||||||    
T  19604365 catacttgatatatatgcttcaaacatatataaataaaagctttggaggaagatgtttcttatttagtaaa--------atagatataaatatttataat 19604274  T
Q  284 gatgtaatttatttgattac 303  Q
     ||||||||||||| |||||    
T  19604273 aatgtaatttatttcattac 19604254  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 19549792 - 19549671
Alignment:
Q  189 ttgatatatatgtttcaaa-catatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatagatataaatatttataatgatg 287  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||  |        ||||||||||||||||||||| |||    
T  19549792 ttgatatatatgcttcaaaacatatataaataaaagctttggaggaagatgtttcttatttagtaaa--------atagatataaatatttataataatg 19549701  T
Q  288 taatttatttgattacacacagcaacaaga 317  Q
    |||||||||| |||||| ||||||||||||    
T  19549700 taatttatttcattacatacagcaacaaga 19549671  T

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Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 317
Target Start/End: Complemental strand, 19654194 - 19654050
Alignment:
Q  184 catacttgatatatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatag-----------atataa 272  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | ||| |||           ||||||    
T  19654194 catatttgatatatatgcttcaaacatatataaataaaagctttggagaaagatgtttcttatttagttgatgacgtctttagtaaatatttatatataa 19654095  T
Q  273 atatttataatgatgtaatttatttgattacacacagcaacaaga 317  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||    
T  19654094 atatttataataatgtaatttatttcattgcacacagcaacaaga 19654050  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 315
Target Start/End: Original strand, 32150345 - 32150574
Alignment:
Q  79 tgtgtttaaattgcacaagtccatctctttcttgatttcacattgagcttggccaca-tactttcaagttctccatttattcttctgccaagaagcacaa 177  Q
    ||||||||| ||||||  ||| ||||| |||||  |||||||||||||||||||| | ||| ||||||||||||| ||||||||||||| |||| || ||    
T  32150345 tgtgtttaagttgcac--gtctatctcattctttctttcacattgagcttggccagactacattcaagttctccacttattcttctgcccagaatcaaaa 32150442  T
Q  178 tgtatacatacttgatatatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctat---agatataaat 274  Q
    | |||||||     ||| ||||| ||||||| |    |||  ||||||||||||||| ||||||||||||||||| |||     |||   | ||||||||    
T  32150443 tctatacat-----atacatatgcttcaaacgt---gaaaataaagctttggaggaagatgtttcttatttagttgatgtttattataacatatataaat 32150534  T
Q  275 atttataatgatgtaatttatttgattacacacagcaacaa 315  Q
    ||||||||| |||| |||||||| ||||| |||||||||||    
T  32150535 atttataataatgt-atttatttcattactcacagcaacaa 32150574  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 19557790 - 19557725
Alignment:
Q  194 atatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccat 260  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  19557790 atatatgcttcaaacatatataa-taaaaactttggaggaagatgtttcttatttagttcatgccat 19557725  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 19626681 - 19626624
Alignment:
Q  104 tctttcttgatttcacattgagcttggccacatactttcaagttctccatttattctt 161  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19626681 tcttgctttatttcacattgagcttggccacatactttcaagttctccacttattctt 19626624  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 18478868 - 18478964
Alignment:
Q  211 atataaataaaagctttggaggaaaatgtttcttatttagttcatgccatct----------atagatataaatatttataatgatgtaatttattt 297  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| |||          ||| ||||||||||||||||| |||||||||||||    
T  18478868 atataaataaaagctttggaggaagatgtttcttatttagttgatgccgtctttagtaaaaaatatatataaatatttataataatgtaatttattt 18478964  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 19626613 - 19626559
Alignment:
Q  263 atagatataaatatttataatgatgtaatttatttgattacacacagcaacaaga 317  Q
    ||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||    
T  19626613 atagatataaatatttataataatgtaatttatttcatgacatacagcaacaaga 19626559  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 19557847 - 19557802
Alignment:
Q  120 attgagcttggccacatactttcaagttctccatttattcttctgc 165  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  19557847 attgagcttggccacatactttcaatttctccacttattcttctgc 19557802  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 19557951 - 19557908
Alignment:
Q  29 tattattcaaaggaaaatgctcattgatacaagacgaaaacaca 72  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  19557951 tattatttaaaggaaaatgctcaatgatacaagacgaaaacaca 19557908  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 19654248 - 19654195
Alignment:
Q  114 tttcacattgagcttggccaca-tactttcaagttctccatttattcttctgcc 166  Q
    |||||||||||||||||||||| |||||||||||||| || |||||||| ||||    
T  19654248 tttcacattgagcttggccacactactttcaagttcttcacttattcttatgcc 19654195  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 19604419 - 19604371
Alignment:
Q  114 tttcacattgagcttggccaca-tactttcaagttctccatttattctt 161  Q
    |||||||||||||||||||||| |||||||||||||| || ||||||||    
T  19604419 tttcacattgagcttggccacactactttcaagttcttcacttattctt 19604371  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 19618000 - 19617903
Alignment:
Q  153 tttattcttctgccaagaagcacaatgtatacatacttgatatatatgt-ttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagt 251  Q
    |||||||||||  |||||| |||||||| |||||||||||||||||| |  | ||||      |||||||||||||||||||| ||||||||||||||||    
T  19618000 tttattcttctttcaagaatcacaatgtgtacatacttgatatatatatgcttaaac--gggaaaataaaagctttggaggaagatgtttcttatttagt 19617903  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 19564059 - 19564004
Alignment:
Q  89 ttgcacaagtccatctctttcttgatttcacattgagcttggccaca-tactttca 143  Q
    ||||| ||||| ||||||||||| |||||| |||||||||||||||| ||||||||    
T  19564059 ttgcataagtctatctctttctttatttcatattgagcttggccacactactttca 19564004  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 32150242 - 32150287
Alignment:
Q  27 tatattattcaaaggaaaatgctcattgatacaagacgaaaacaca 72  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||    
T  32150242 tatattatttaaaggaaaatgttcaatgatacaagaagaaaacaca 32150287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 19594054 - 19594014
Alignment:
Q  274 tatttataatgatgtaatttatttgattacacacagcaaca 314  Q
    |||||||||| ||||||||||||| |||||||||| |||||    
T  19594054 tatttataataatgtaatttatttcattacacacaacaaca 19594014  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 18025716 - 18025650
Alignment:
Q  181 atacatacttgatatatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagtt 252  Q
    |||||||||||||||||||| ||||||||||||||||||     |||||||||| |||||||||||||||||    
T  18025716 atacatacttgatatatatgcttcaaacatatataaata-----tttggaggaagatgtttcttatttagtt 18025650  T

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