View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13733_low_16 (Length: 284)
Name: NF13733_low_16
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 35761498 - 35761750
Alignment:
| Q |
14 |
gaacagtgcggggttgctctacgatcgtttgacgaagatgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttgatcat |
113 |
Q |
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| T |
35761498 |
gaacattgcggggttgctctacgatcgtttgacgaagatgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttgatcat |
35761597 |
T |
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| Q |
114 |
attgataaaggaattctaggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatgg |
213 |
Q |
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| T |
35761598 |
attgataaaggaattctaggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatgg |
35761697 |
T |
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| Q |
214 |
aatcaaaaaagagggttatcccaattttctatgatgttaaaccttcccagctt |
266 |
Q |
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| T |
35761698 |
aatcaaaaaagagggttatcccaattttctatgatgttaaaccttcccagctt |
35761750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 3393932 - 3393760
Alignment:
| Q |
51 |
atgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttgatcatattgataaaggaattctaggttgcaaagttggtgttg |
150 |
Q |
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| T |
3393932 |
atgggagtgagatcgtttttggacagtatgaacatgaaaccaggagacaaactatttcatcatatcgataaagcaattattggttgtaaggttggtgtta |
3393833 |
T |
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| Q |
151 |
ctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaa |
223 |
Q |
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| T |
3393832 |
ccgtgttctctcctcgttattgtgactcttattattgtctccacgaactcgctcttctgatggagacaaaaaa |
3393760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 3387326 - 3387244
Alignment:
| Q |
141 |
gttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaa |
223 |
Q |
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|||||||||| ||| || ||||| | |||||| |||||||||| |||||||||||| || |||||||||||||| ||||||| |
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| T |
3387326 |
gttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacaaaaaa |
3387244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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