View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13733_low_20 (Length: 254)

Name: NF13733_low_20
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13733_low_20
NF13733_low_20
[»] chr5 (2 HSPs)
chr5 (17-238)||(30803522-30803743)
chr5 (68-150)||(10548320-10548402)
[»] chr4 (2 HSPs)
chr4 (18-150)||(34441553-34441685)
chr4 (17-160)||(8332582-8332725)
[»] chr1 (3 HSPs)
chr1 (75-161)||(42624146-42624232)
chr1 (19-94)||(31230248-31230323)
chr1 (116-159)||(31230197-31230240)
[»] scaffold0590 (2 HSPs)
scaffold0590 (17-150)||(4868-5007)
scaffold0590 (88-150)||(7545-7607)
[»] chr6 (2 HSPs)
chr6 (17-116)||(27368893-27368988)
chr6 (17-116)||(27459240-27459335)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 30803743 - 30803522
Alignment:
Q  17 ttctcctaacctcatctcttgttttactatccttattttcctgcaattttatttcctacaattttactatctcattgtgtgttcaaagtgaaacattatc 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30803743 ttctcctaacctcttctcttgttttactatccttattttcctgcaattttatttcctacaattttactatctcattgtgtgttcaaagtgaaacattatc 30803644  T
Q  117 aattaatttagattcccttatatcaattttagtatccttacaatccagtatatatctttgaggttttgataataacagaaacaaaatgaacattttgttt 216  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  30803643 aattaatttagattcccttatatcaattttagtaccgttacaatacagtatatatctttgaggttttgataatagcaaaaacaaaatgaatattttgttt 30803544  T
Q  217 gatgacaaattgtttaagtatg 238  Q
    ||||||||||||||||||||||    
T  30803543 gatgacaaattgtttaagtatg 30803522  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 10548320 - 10548402
Alignment:
Q  68 tttcctacaattttactatctcattgtgtgttcaaagtgaaacattatcaattaatttagattcccttatatcaattttagta 150  Q
    |||||| |||||||||| | |||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  10548320 tttcctgcaattttactctgtcattgtgtgttcacagtgaaacattatcaattaattgagatttccttatatccattttagta 10548402  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 34441685 - 34441553
Alignment:
Q  18 tctcctaacctcatctcttgttttactatccttattttcctgcaattttattt-cctacaattttactatctcattgtgtgttcaaagtgaaacattatc 116  Q
    |||||||||||| ||||||  || ||||||||||| ||| ||||||||||||| ||| ||||| |||| | |||||||||||||| ||||||||||||||    
T  34441685 tctcctaacctcttctcttagtt-actatccttatattcttgcaattttattttcctgcaattgtactctgtcattgtgtgttcacagtgaaacattatc 34441587  T
Q  117 aattaatttagattcccttatatcaattttagta 150  Q
    |||||||| ||||| |||||||||||||||||||    
T  34441586 aattaattgagatttccttatatcaattttagta 34441553  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 8332582 - 8332725
Alignment:
Q  17 ttctcctaacctcatctcttgttttactatccttattttcctgcaattttatttcctacaattttactatctcattgtgtgttcaaagtgaaacattatc 116  Q
    ||||||||||| | |||||  ||||| ||||||||||||| |||||||||||||||| ||||| |||| | | ||||||| |||| ||  ||||||||||    
T  8332582 ttctcctaaccgcttctctcattttaatatccttattttcatgcaattttatttcctgcaattatactctgtgattgtgtattcacagcaaaacattatc 8332681  T
Q  117 aattaatttagattcccttatatcaattttagtatccttacaat 160  Q
    |||||||| ||||| ||||||||||||||||||| | |||||||    
T  8332682 aattaattgagatttccttatatcaattttagtaccattacaat 8332725  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 42624146 - 42624232
Alignment:
Q  75 caattttactatctcattgtgtgttcaaagtgaaacattatcaattaatttagattcccttatatcaattttagtatccttacaatc 161  Q
    ||||| |||| |||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||    
T  42624146 caattgtactctctcgttgtgtgttcacagtgaaacattatcaattaattgagatttccttatatcaattttagtaccattacaatc 42624232  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 31230323 - 31230248
Alignment:
Q  19 ctcctaacctcatctcttgttttactatccttattttcctgcaattttatttcctacaattttactatctcattgt 94  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||  |||| ||||| |||| |||||||||    
T  31230323 ctcctaacctcttctcttgttttactatccttatttccctgcaattttacctcctgcaattgtactctctcattgt 31230248  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 31230240 - 31230197
Alignment:
Q  116 caattaatttagattcccttatatcaattttagtatccttacaa 159  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||    
T  31230240 caattaattgagatttccttatatcaattttagtatcattacaa 31230197  T

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Target: scaffold0590 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 5007 - 4868
Alignment:
Q  17 ttctcctaacctcatctcttgttttactatccttattttcctgcaattttattt------cctacaattttactatctcattgtgtgttcaaagtgaaac 110  Q
    |||| |||||||| |||||  ||||||||||||||||||||||||||||| |||      ||| || || ||||   ||||||| |||||| || |||||    
T  5007 ttcttctaacctcttctctcattttactatccttattttcctgcaattttttttttttttcctgcagttgtactcaatcattgtatgttcacagggaaac 4908  T
Q  111 attatcaattaatttagattcccttatatcaattttagta 150  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  4907 attatcaattaattgagatttccttatatcaattttagta 4868  T

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Target: scaffold0590; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 7607 - 7545
Alignment:
Q  88 tcattgtgtgttcaaagtgaaacattatcaattaatttagattcccttatatcaattttagta 150  Q
    ||||||| |||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  7607 tcattgtatgttcatagtgaaacattatcaattaattgagatttccttttatcaattttagta 7545  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 27368893 - 27368988
Alignment:
Q  17 ttctcctaacctcatctcttgttttactatccttattttcctgcaattttatttcctacaattttactatctcattgtgtgttcaaagtgaaacattatc 116  Q
    |||| |||||| | |||||  ||||||||||||||||||| |||||||||||||||| ||||| ||    ||||||||||||||| |||||||| |||||    
T  27368893 ttcttctaaccacttctctcattttactatccttattttcttgcaattttatttcctgcaattgta----ctcattgtgtgttcacagtgaaacgttatc 27368988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 27459240 - 27459335
Alignment:
Q  17 ttctcctaacctcatctcttgttttactatccttattttcctgcaattttatttcctacaattttactatctcattgtgtgttcaaagtgaaacattatc 116  Q
    |||| |||||| | |||||  ||||||||||||||||||| |||||||||||||||| ||||| ||    ||||||||||||||| |||||||| |||||    
T  27459240 ttcttctaaccacttctctcattttactatccttattttcttgcaattttatttcctgcaattgta----ctcattgtgtgttcacagtgaaacgttatc 27459335  T

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