View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13733_low_3 (Length: 593)
Name: NF13733_low_3
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 167 - 578
Target Start/End: Complemental strand, 45650550 - 45650146
Alignment:
| Q |
167 |
atattgtaattgttttataaattgatttacttaaaacagcgaatctataacttactccgtagaagatataaaaactttgtnnnnnnnnnnnnnnntattc |
266 |
Q |
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| T |
45650550 |
atattgtaattgttttataaattgatttacttaaaacagcgaatctataacttactccgtagaagatataaaaactttgtaaaaaaatgaaaaaatattc |
45650451 |
T |
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| Q |
267 |
tgtggaagaaattgacgagaattaaaacaagaaatagtcataataagcaggtaatata--acaagcatataatttaaattaaaaacgtgatcagacctat |
364 |
Q |
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| T |
45650450 |
tgtggaagaaattgacgagaattaaaacaagaaatagtcataataagcaggtaatatataacaagcatataatttaaattaaaaacgtgatcagacctat |
45650351 |
T |
|
| Q |
365 |
gatttggatgcaagttgggacttctatagatatacattaatcagagtatatccatccatattcacaacggcgtgggtcaggcaagatgtgcattgctgga |
464 |
Q |
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| T |
45650350 |
gatttggatgcaagttgggacttctatag--atacattaatcaaagtat----atccatattcacaacggcgtgggtcaggcaagatgtgcattgctgga |
45650257 |
T |
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| Q |
465 |
gatgcaagtcaaaacattcgnnnnnnnnnnnnggataaaaatgaaagtcaaatctcaaatttcaagaacaaggcacaaaccaaaccaccagtgcccttct |
564 |
Q |
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| T |
45650256 |
gatgcaagtcaaaacattcgttttttatttttggataaaaatgaaagtcaaatctcaaatttcaagaacaaggcacaaaccaa---accagtgcccttct |
45650160 |
T |
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| Q |
565 |
gtttgggttccttc |
578 |
Q |
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| T |
45650159 |
gtttgggttccttc |
45650146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45650756 - 45650610
Alignment:
| Q |
1 |
acaacatagttgctagaagtaaagctaaatttatcaacatggtgtnnnnnnnnnnnnnnnnnnatactatcttattttgcaatgaatctcacttaaaaaa |
100 |
Q |
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| T |
45650756 |
acaacatagttgctagaagtaaagctaaatttatcaacatggtgtgattgagagagaga----atactatcttattttgcaatgaatctcacttaaaaaa |
45650661 |
T |
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| Q |
101 |
tagtatg-aaattaacaaggaaaaacctcaagagtatcttataagcatata |
150 |
Q |
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| T |
45650660 |
tagtatgaaaattaataaggaaaaacctcaagaatatcttattagtatata |
45650610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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