View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13733_low_5 (Length: 469)

Name: NF13733_low_5
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13733_low_5
NF13733_low_5
[»] chr2 (16 HSPs)
chr2 (3-456)||(40879453-40879898)
chr2 (257-438)||(7586400-7586581)
chr2 (256-446)||(31205799-31205990)
chr2 (257-438)||(8854088-8854269)
chr2 (257-438)||(9073783-9073964)
chr2 (257-438)||(30820480-30820661)
chr2 (257-438)||(12856968-12857149)
chr2 (256-429)||(31186083-31186255)
chr2 (256-343)||(4278258-4278343)
chr2 (387-438)||(8853926-8853977)
chr2 (387-438)||(12856888-12856939)
chr2 (329-370)||(6333067-6333108)
chr2 (387-436)||(9073993-9074042)
chr2 (387-441)||(7586569-7586625)
chr2 (387-441)||(9073952-9074008)
chr2 (387-441)||(30820649-30820705)
[»] chr8 (7 HSPs)
chr8 (257-456)||(30530474-30530673)
chr8 (257-446)||(27359156-27359345)
chr8 (257-446)||(27368513-27368702)
chr8 (257-446)||(17743675-17743864)
chr8 (257-438)||(15055638-15055819)
chr8 (257-438)||(1956150-1956331)
chr8 (387-419)||(15055452-15055484)
[»] scaffold1240 (1 HSPs)
scaffold1240 (256-456)||(557-757)
[»] chr4 (23 HSPs)
chr4 (282-456)||(34435401-34435575)
chr4 (259-437)||(33606095-33606273)
chr4 (257-438)||(16172718-16172899)
chr4 (257-438)||(8993777-8993958)
chr4 (257-438)||(13112555-13112736)
chr4 (257-438)||(3616115-3616296)
chr4 (257-438)||(46915340-46915521)
chr4 (276-438)||(3531145-3531307)
chr4 (257-438)||(2213146-2213326)
chr4 (256-405)||(36657582-36657730)
chr4 (257-380)||(28446348-28446471)
chr4 (257-456)||(53182276-53182460)
chr4 (387-456)||(33606037-33606106)
chr4 (387-438)||(2213437-2213488)
chr4 (417-456)||(36657570-36657609)
chr4 (387-438)||(46915632-46915683)
chr4 (387-438)||(3531336-3531387)
chr4 (387-438)||(16173055-16173106)
chr4 (387-438)||(16173094-16173145)
chr4 (387-441)||(3531295-3531351)
chr4 (387-441)||(3531457-3531513)
chr4 (387-441)||(8993733-8993789)
chr4 (387-441)||(13112511-13112567)
[»] chr1 (25 HSPs)
chr1 (256-456)||(33166278-33166478)
chr1 (256-456)||(47298395-47298595)
chr1 (256-456)||(38837535-38837732)
chr1 (256-456)||(17785337-17785537)
chr1 (256-456)||(17677157-17677358)
chr1 (257-429)||(51522343-51522515)
chr1 (257-444)||(8470333-8470520)
chr1 (257-438)||(48406419-48406600)
chr1 (257-438)||(48386046-48386227)
chr1 (256-427)||(18318635-18318805)
chr1 (257-438)||(2475990-2476171)
chr1 (257-438)||(31470277-31470458)
chr1 (257-438)||(45241129-45241310)
chr1 (387-438)||(8470261-8470312)
chr1 (387-444)||(8470294-8470351)
chr1 (387-438)||(31469996-31470047)
chr1 (387-438)||(31470158-31470209)
chr1 (387-438)||(31470197-31470248)
chr1 (46-93)||(40037027-40037074)
chr1 (401-446)||(51522304-51522349)
chr1 (387-441)||(31470114-31470170)
chr1 (387-441)||(31470233-31470289)
chr1 (387-441)||(45241085-45241141)
chr1 (387-441)||(48386215-48386271)
chr1 (387-441)||(48386256-48386312)
[»] chr3 (39 HSPs)
chr3 (257-456)||(33750654-33750855)
chr3 (256-455)||(50019091-50019290)
chr3 (256-456)||(26157948-26158148)
chr3 (257-438)||(30416327-30416508)
chr3 (257-438)||(42563001-42563182)
chr3 (257-438)||(10425523-10425704)
chr3 (257-438)||(17468505-17468686)
chr3 (257-438)||(25788571-25788752)
chr3 (257-438)||(42599226-42599407)
chr3 (257-438)||(47146362-47146543)
chr3 (257-438)||(25830528-25830709)
chr3 (276-438)||(6046218-6046380)
chr3 (336-456)||(33188901-33189021)
chr3 (281-424)||(21227202-21227345)
chr3 (358-438)||(51429021-51429100)
chr3 (387-438)||(25788781-25788832)
chr3 (387-438)||(25788928-25788979)
chr3 (387-438)||(25830738-25830789)
chr3 (387-438)||(25830885-25830936)
chr3 (387-438)||(47146036-47146087)
chr3 (387-438)||(47146202-47146253)
chr3 (378-438)||(42599585-42599645)
chr3 (387-438)||(42562769-42562820)
chr3 (387-438)||(42599436-42599487)
chr3 (387-438)||(42599475-42599526)
chr3 (387-438)||(47146323-47146374)
chr3 (257-437)||(21230393-21230574)
chr3 (389-441)||(42562805-42562857)
chr3 (387-438)||(6046450-6046501)
chr3 (387-438)||(6046612-6046663)
chr3 (387-438)||(6046733-6046784)
chr3 (387-438)||(42599555-42599606)
chr3 (387-441)||(17468461-17468517)
chr3 (387-441)||(30416496-30416552)
chr3 (67-184)||(32240660-32240779)
chr3 (387-441)||(42599395-42599451)
chr3 (387-441)||(42599514-42599570)
chr3 (329-370)||(53722743-53722784)
chr3 (388-441)||(10425816-10425871)
[»] chr7 (15 HSPs)
chr7 (257-438)||(22658938-22659119)
chr7 (256-441)||(32128091-32128276)
chr7 (256-437)||(26814175-26814356)
chr7 (257-438)||(36520521-36520702)
chr7 (257-438)||(22193305-22193486)
chr7 (387-456)||(26814117-26814186)
chr7 (387-456)||(32128300-32128369)
chr7 (387-438)||(22193078-22193129)
chr7 (387-438)||(22193225-22193276)
chr7 (387-431)||(22658622-22658666)
chr7 (387-438)||(22658573-22658624)
chr7 (387-438)||(22658654-22658705)
chr7 (387-438)||(22658693-22658744)
chr7 (387-439)||(22658731-22658783)
chr7 (378-438)||(32128252-32128312)
[»] chr6 (21 HSPs)
chr6 (257-437)||(18641297-18641477)
chr6 (257-406)||(8221233-8221382)
chr6 (257-438)||(34840500-34840681)
chr6 (256-438)||(24917448-24917630)
chr6 (257-438)||(17959161-17959342)
chr6 (257-438)||(633759-633940)
chr6 (257-438)||(6378293-6378474)
chr6 (263-359)||(24114211-24114307)
chr6 (387-456)||(24917618-24917687)
chr6 (378-438)||(8220864-8220924)
chr6 (387-444)||(8220897-8220954)
chr6 (378-456)||(18641239-18641317)
chr6 (387-444)||(8220936-8220993)
chr6 (387-438)||(633385-633436)
chr6 (387-438)||(633532-633583)
chr6 (387-438)||(633679-633730)
chr6 (387-438)||(6378503-6378554)
chr6 (387-438)||(6378650-6378701)
chr6 (387-438)||(8221148-8221199)
chr6 (378-437)||(24114148-24114207)
chr6 (387-441)||(17959330-17959386)
[»] chr5 (14 HSPs)
chr5 (257-438)||(29617392-29617573)
chr5 (257-438)||(30646727-30646908)
chr5 (257-438)||(4579098-4579279)
chr5 (257-438)||(32974221-32974402)
chr5 (257-438)||(40890816-40890997)
chr5 (257-438)||(27944645-27944826)
chr5 (387-438)||(27406303-27406354)
chr5 (389-438)||(4578977-4579026)
chr5 (329-370)||(34918157-34918198)
chr5 (387-438)||(27944483-27944534)
chr5 (398-438)||(27406275-27406315)
chr5 (387-434)||(29617728-29617775)
chr5 (387-441)||(4579054-4579110)
chr5 (387-440)||(4578934-4578989)
[»] scaffold0004 (3 HSPs)
scaffold0004 (256-434)||(104888-105066)
scaffold0004 (387-456)||(104788-104857)
scaffold0004 (378-438)||(104845-104905)
[»] scaffold0658 (1 HSPs)
scaffold0658 (328-446)||(7019-7136)
[»] scaffold0007 (1 HSPs)
scaffold0007 (281-437)||(167228-167384)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 456
Target Start/End: Original strand, 40879453 - 40879898
Alignment:
Q  3 gctacagcaggatgaactgcagttactctattagttatggagatatttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaaggtagataa 102  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40879453 gctacagcaggatgaactgcagttactctattagttatgg-----tttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaaggtagataa 40879547  T
Q  103 ataaacaggtcgaaaagtatattatactcaattaaaaagttgtgcttttaacatgtcaatatatgtggagcagcctggtcttggnnnnnnnnttcatatt 202  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  40879548 ataaacaggtcgaaaagtatattatactcaactaaaaagttgtgcttttaacatgtcaatatatgtggagcagcctggtcttggaaaaaaa-ttcatatt 40879646  T
Q  203 acaacagcaaaggactagacaacatattgaagaaagagatttgtttcttcaatctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaa 302  Q
    ||||||||||||||| ||||||||  ||||||||| | |||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||    
T  40879647 acaacagcaaaggacaagacaacagtttgaagaaacatatttgtttcttcaatctgtatgtaaagttaagttccaaagagcatctcgatgatcggaaaaa 40879746  T
Q  303 agagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtctagtcccca 402  Q
     ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||  ||||||||||||||||    
T  40879747 ggagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttg--ttcggtcaaaattgtcagtgttgtctagtcccca 40879844  T
Q  403 gtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  40879845 gtgtttgctttaataattgtcagtgttgtctagtcctcggtgatagtccttagt 40879898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 7586400 - 7586581
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  7586400 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 7586499  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  7586500 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 7586581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 256 - 446
Target Start/End: Original strand, 31205799 - 31205990
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    |||||||||| ||||||||  ||| |  |||||||||| |||||||||||| |||||| ||| |||||  |||||||||||  |||||||||||||||||    
T  31205799 ctgtatgtaatgttaagttctgaagaatatctcgatgaccggaaaaaagagatgttggaaaacttggaatgtgagctgtttgaaaattaatttcaatcaa 31205898  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatg-ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 446  Q
    |||||||||||||||| || | |||||||  || ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||    
T  31205899 atatttgtttgtattcggtaataattgtcagtgtttgtctagtccccagtgtttgctttaataattgttagtgttgtctagttctcagtgat 31205990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 8854269 - 8854088
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  8854269 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8854170  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | ||||||||||||  |||||||||||||||||||||    
T  8854169 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatcattgtcagtgttgtctagtcc 8854088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 9073783 - 9073964
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  9073783 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 9073882  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  9073883 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 9073964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 30820480 - 30820661
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  30820480 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30820579  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  30820580 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 30820661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 12857149 - 12856968
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  12857149 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 12857050  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  12857049 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 12856968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 256 - 429
Target Start/End: Original strand, 31186083 - 31186255
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    |||||||||| |||||||| || | | ||||||||||| |||||||||||| |||||| ||| ||||| ||||||||||||  |||||||||||||||||    
T  31186083 ctgtatgtaatgttaagttccggagaacatctcgatgaccggaaaaaagagatgttggaaaacttggaacgtgagctgtttgaaaattaatttcaatcaa 31186182  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgtt 429  Q
    |||||||||||||||| || | |||||||  ||||||||||| |||||||||| |||||| |||||||||||||    
T  31186183 atatttgtttgtattcggtaataattgtcagtgttgtctagt-cccagtgttttctttaataattgtcagtgtt 31186255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 4278343 - 4278258
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaatt 343  Q
    |||||||||||||||||||||||| ||||||||||||| ||  ||||| || |||||| | |||||||||||||||||||| ||||||    
T  4278343 ctgtatgtaaagttaagtttcgaagagcatctcgatgaccg--aaaaatagctgttggaagagttggagcgtgagctgtttggaaatt 4278258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 8853977 - 8853926
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  8853977 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 8853926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 12856939 - 12856888
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  12856939 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 12856888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 6333067 - 6333108
Alignment:
Q  329 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 370  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  6333067 agctgtttggaaattaatttcaatcaaatatttgtctgtatt 6333108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 9073993 - 9074042
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagt 436  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||    
T  9073993 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagt 9074042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 7586569 - 7586625
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  7586569 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 7586625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 9073952 - 9074008
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  9073952 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 9074008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 30820649 - 30820705
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  30820649 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 30820705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 257 - 456
Target Start/End: Original strand, 30530474 - 30530673
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    |||||||||||||||||| | || ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30530474 tgtatgtaaagttaagttccaaagagcatctcgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 30530573  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    ||||||||||||||| ||||||||||||  |||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  30530574 tatttgtttgtattcggtcaaaattgtcagtgttgtctagtcccgagcgtttactttaataattgtcagtgttgtctagtcctcagtgatagtccctagt 30530673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 257 - 446
Target Start/End: Complemental strand, 27359345 - 27359156
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| |||||||||||| |||| ||||||||||||  || || ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  27359345 tgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaattaatttcaatcaaa 27359246  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 446  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  27359245 tatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctagtcctcagtgat 27359156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 257 - 446
Target Start/End: Complemental strand, 27368702 - 27368513
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| |||||||||||| |||| ||||||||||||  || || ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  27368702 tgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaattaatttcaatcaaa 27368603  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 446  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  27368602 tatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctagtcctcagtgat 27368513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 257 - 446
Target Start/End: Complemental strand, 17743864 - 17743675
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||||||  ||||| ||| ||||||||||||||||||  |||||||||||||||||     
T  17743864 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagacgttggaaaacttggagcgtgagctgtttgcaaattaatttcaatcaac 17743765  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 446  Q
    ||||||||||||||| || | |||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  17743764 tatttgtttgtattcggtaataattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatgttgtctagtcctcagtgat 17743675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 15055819 - 15055638
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  15055819 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 15055720  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  15055719 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 15055638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 1956150 - 1956331
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  1956150 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 1956249  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  1956250 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 1956331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 15055484 - 15055452
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaat 419  Q
    |||||||||||||||| ||||||||||||||||    
T  15055484 tgttgtctagtccccactgtttgctttaacaat 15055452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 256 - 456
Target Start/End: Original strand, 557 - 757
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| |||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  557 ctgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaagagctgttggaaaacttggagcgtgagctgtttggaaattaatttcaatcaa 656  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 455  Q
    ||| |||||||||||| ||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  657 ataattgtttgtattcggtcaaaattgtcagtgttgtatagtccccagtgtttgctttaataattgtcagtgttgtctagtcctcaatgatagtccctag 756  T
Q  456 t 456  Q
    |    
T  757 t 757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 282 - 456
Target Start/End: Original strand, 34435401 - 34435575
Alignment:
Q  282 gcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaatt 381  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  34435401 gcatctcgacgaccggaaaaaagagttgttggaaaagttggagcgtgagctattttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaatt 34435500  T
Q  382 gtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    ||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  34435501 gtcaatgttgtctagtccctagtgtttgctttaataattgttagtgttgtctagtcctcagtgatagtccctagt 34435575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 259 - 437
Target Start/End: Complemental strand, 33606273 - 33606095
Alignment:
Q  259 tatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaata 358  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  33606273 tatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagttgttggaagagttggagcgtgagctgttttgaaattaatttcaatcaaata 33606174  T
Q  359 tttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 437  Q
    |||||| |||||| ||||||||||||  ||||||||||| |||| ||||| |||||| |||||| ||||||||||||||    
T  33606173 tttgttggtattcggtcaaaattgtcagtgttgtctagttcccaatgtttactttaataattgttagtgttgtctagtc 33606095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 16172718 - 16172899
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  16172718 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttggaaattaattttaatcaaa 16172817  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||||||| ||  |||| ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  16172818 tatttgtttgtattcagtcaaaattatcagtgttatctagtcccgagtgtttgctttaatatttgtcagtgttgcctagtcc 16172899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 8993958 - 8993777
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  8993958 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8993859  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  8993858 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 8993777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 13112736 - 13112555
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  13112736 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 13112637  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  13112636 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 13112555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 3616115 - 3616296
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |||||  |||||||||| |||||||    
T  3616115 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaattttaatcaaa 3616214  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  3616215 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccaactgtttgctttaatatttgtcagtgttgtctagtcc 3616296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 46915340 - 46915521
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||| ||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  46915340 tgtatctaaagttaagggacgaagagcatgtcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 46915439  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  46915440 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 46915521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 276 - 438
Target Start/End: Original strand, 3531145 - 3531307
Alignment:
Q  276 cgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtc 375  Q
    |||| ||||||||||||| ||||| || ||| ||||||| |||||||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  3531145 cgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcatgagctgtttgaaaattaattttaatcaaatatttgtttgtattcagtc 3531244  T
Q  376 aaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    || ||| ||  |||||||||||| | | |||||||||||| | ||||||||||||||||||||    
T  3531245 aacattatcagtgttgtctagtctcgactgtttgctttaatatttgtcagtgttgtctagtcc 3531307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 2213146 - 2213326
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  2213146 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 2213245  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | |||||| |||||||||||||    
T  2213246 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtca-tgttgtctagtcc 2213326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 256 - 405
Target Start/End: Complemental strand, 36657730 - 36657582
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| |||||||| |||| || |||||| || |||| | ||| ||||||||||||||||||  |||||||||||||||||    
T  36657730 ctgtatgtaaagttaagttccgaagagcatctcaatgaccg-aaaaaatagctgttagaaaacttggagcgtgagctgtttgaaaattaatttcaatcaa 36657632  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtg 405  Q
    |||||||||||||||  ||||||||||||  ||||||||||||| |||||    
T  36657631 atatttgtttgtatttggtcaaaattgtcagtgttgtctagtcctcagtg 36657582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 257 - 380
Target Start/End: Complemental strand, 28446471 - 28446348
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    |||||||||||||||||  |||| |||||||| |||| ||||| |||||| |||||| |||||||| |  |||| |||||||||||||||||||||||||    
T  28446471 tgtatgtaaagttaagtcccgaagagcatctcaatgaccggaagaaagagatgttggaaaagttggtgtttgagttgttttgaaattaatttcaatcaaa 28446372  T
Q  357 tatttgtttgtattcagtcaaaat 380  Q
    ||||||||||||||||||||||||    
T  28446371 tatttgtttgtattcagtcaaaat 28446348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 257 - 456
Target Start/End: Original strand, 53182276 - 53182460
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||||  ||| ||||||| ||||| |||||||||||| |||||| ||| |||| |||||||||||||||||||                  
T  53182276 tgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagagctgttggaaaacttggtgcgtgagctgttttgaaat-------------- 53182361  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
     |||||||||||||| ||||||||||||  ||||||||||  |||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||    
T  53182362 -atttgtttgtattcggtcaaaattgtcagtgttgtctaggtcccaatgtttactttaataattgtcagtattgtctagtcctcagtgatagtccctagt 53182460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 33606106 - 33606037
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    |||||||||||| ||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  33606106 tgttgtctagtctccaatgtttactttaataattgacagtgttgtctagtcctcagtgatagtccctagt 33606037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 2213437 - 2213488
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  2213437 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 2213488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 456
Target Start/End: Complemental strand, 36657609 - 36657570
Alignment:
Q  417 aattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36657609 aattgtcagtgttgtctagtcctcagtgatagtccctagt 36657570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 46915632 - 46915683
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  46915632 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 46915683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 3531336 - 3531387
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||| || |||||||||||| | ||||||||||||||||||||    
T  3531336 tgttgtctagtcctcactgtttgctttaatatttgtcagtgttgtctagtcc 3531387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 16173055 - 16173106
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||||||    
T  16173055 tgttgtctagtcccgactgtttgctttaataattatcagtgttgtctagtcc 16173106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 16173094 - 16173145
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||| | |||||||||||| || | |||||||||||||||||    
T  16173094 tgttgtctagtcccgactgtttgctttaataaatatcagtgttgtctagtcc 16173145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 3531295 - 3531351
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  3531295 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 3531351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 3531457 - 3531513
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    ||||||||||||| || |||||||||||| |||| ||  ||||||||||||||||||    
T  3531457 tgttgtctagtcctcactgtttgctttaataattatcagagtgttgtctagtcctca 3531513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 8993789 - 8993733
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  8993789 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 8993733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 13112567 - 13112511
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  13112567 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 13112511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 256 - 456
Target Start/End: Complemental strand, 33166478 - 33166278
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| || |||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  33166478 ctgtatgtaaagttaagttccgaagagaatcttgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaa 33166379  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 455  Q
    |||||||||||||||| ||||||||||||  |||||||||||| ||| | ||| |||||| |||||||||||||||||||||||||||||||||| ||||    
T  33166378 atatttgtttgtattcggtcaaaattgtcagtgttgtctagtctccaatttttactttaataattgtcagtgttgtctagtcctcagtgatagtctctag 33166279  T
Q  456 t 456  Q
    |    
T  33166278 t 33166278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 256 - 456
Target Start/End: Original strand, 47298395 - 47298595
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| || |||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  47298395 ctgtatgtaaagttaagttccgaagagtatctcgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaattgcaatcca 47298494  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 455  Q
    |||||||||||||||| ||||||||||||  |||||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  47298495 atatttgtttgtattcggtcaaaattgtcagtgttgtttagaccccaatgtttgctttaataattgtcagtgttgtctagtcctcagtgatggtccctag 47298594  T
Q  456 t 456  Q
    |    
T  47298595 t 47298595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 256 - 456
Target Start/End: Original strand, 38837535 - 38837732
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||   ||| ||||| |    
T  38837535 ctgtatgtaaagttaaattccgaagagcatctcgatgaccggaaaaaagagttgttggaaaagttggagcgtgagctgttttgaaa---attgcaatcca 38837631  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 455  Q
    |||||||||||||||| ||||||||||||| ||||||| || || ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  38837632 atatttgtttgtattcggtcaaaattgtcggtgttgtcaagacctcagtgtttgctttaataattgtcagtgttgtcaagttctcagtgatagtccctag 38837731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 256 - 456
Target Start/End: Complemental strand, 17785537 - 17785337
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| |||||||||||||   |||||||||| |  ||| ||| |||||||||||||||||||||||||||||||||||||    
T  17785537 ctgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagctactggaaaacttggagcgtgagctgttttgaaattaatttcaatcaa 17785438  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 455  Q
    ||| |||||||||||| ||||||||||||  |||||||||||| | |||||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  17785437 ataattgtttgtattcggtcaaaattgtcagtgttgtctagtctctagtgtttgctttaataattattagtgttgtctagtcctcagtgatagtccctag 17785338  T
Q  456 t 456  Q
    |    
T  17785337 t 17785337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 256 - 456
Target Start/End: Original strand, 17677157 - 17677358
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcgg-aaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatca 354  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||     
T  17677157 ctgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaaagagctgttggaaaagttggagcgtgagctattttgaaattaattgcaatcc 17677256  T
Q  355 aatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtcccta 454  Q
    ||||||||||||||||| ||||||||||||  |||||||||| ||  |||||||| ||||| |||||||| ||||||||||||||||||||||| |||||    
T  17677257 aatatttgtttgtattcggtcaaaattgtcagtgttgtctagaccttagtgtttgttttaataattgtcaatgttgtctagtcctcagtgatagccccta 17677356  T
Q  455 gt 456  Q
    ||    
T  17677357 gt 17677358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 257 - 429
Target Start/End: Complemental strand, 51522515 - 51522343
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    |||||||||||||||||| |||| ||||||||||||| ||||| |||| | |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  51522515 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaagaaagtgctgttggaaaagttggagcgtgagctgttttgaaattaatttcactcaaa 51522416  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgtt 429  Q
    ||||||||||||||| ||||||||||||  ||||||||||||  ||||||||||||||| |||||||||||||    
T  51522415 tatttgtttgtattcggtcaaaattgtcagtgttgtctagtctacagtgtttgctttaataattgtcagtgtt 51522343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 257 - 444
Target Start/End: Complemental strand, 8470520 - 8470333
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| |||||||||||| |||| ||||||||||||| |||||  ||||| |||||||||||||||||| ||||||||||  || ||||||| ||| |||    
T  8470520 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagtaagagctgttgggaaagttggagcttgagctgtttaaaagttaattttaattaaa 8470421  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtg 444  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||    
T  8470420 tatttgtttgtattcagtcaaaattatcagtgttgtctagtccccaatgtttgctttaataattatcagtgttgtctagtccccagtg 8470333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 48406600 - 48406419
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| |||||||||||| |||| ||||||||||||| || || |||||||||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  48406600 tgtatctaaagttaagttccgaagagcatctcgatgaccgaaagaaagagttgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 48406501  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||||||| | |||||||| || ||||||||    
T  48406500 tatttgtttatattcagtcaaaattatcagtgttgtctagtcccgagtgtttgctttaatatttgtcagtattatctagtcc 48406419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 48386046 - 48386227
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  48386046 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 48386145  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  48386146 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 48386227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 256 - 427
Target Start/End: Original strand, 18318635 - 18318805
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    |||||| |||||||| ||| |||| ||||||||||||| ||||| |||||| | |||| |||||||||||||||||| |||  |||||||||||||||||    
T  18318635 ctgtatctaaagtta-gttccgaagagcatctcgatgaccggaagaaagagctattggaaaagttggagcgtgagctatttgaaaattaatttcaatcaa 18318733  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtg 427  Q
    |||||||||||||||| || |||||||||  |||||||||||||||| |||||||||||| |||||||||||    
T  18318734 atatttgtttgtattcggttaaaattgtcagtgttgtctagtccccactgtttgctttaataattgtcagtg 18318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 2475990 - 2476171
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |||||  |||||||||| |||||||    
T  2475990 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaattttaatcaaa 2476089  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  2476090 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccaactgtttgctttaatatttgtcagtgttgtctagtcc 2476171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 31470458 - 31470277
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  31470458 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 31470359  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  31470358 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 31470277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 45241310 - 45241129
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  45241310 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 45241211  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  45241210 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 45241129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 8470312 - 8470261
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  8470312 tgttgtttagtccccagtgtttgctttaataattgtcagtgttgtctagtcc 8470261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 8470351 - 8470294
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtg 444  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||    
T  8470351 tgttgtctagtccccagtgtttgctttaataattatcagtgttgtttagtccccagtg 8470294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 31470047 - 31469996
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  31470047 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 31469996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 31470209 - 31470158
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  31470209 tgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 31470158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 31470248 - 31470197
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  31470248 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 31470197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 40037074 - 40037027
Alignment:
Q  46 tatttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaa 93  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  40037074 tattttagagaaagattttgctgaacaaacagaagaagaaaaatcaaa 40037027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 51522349 - 51522304
Alignment:
Q  401 cagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 446  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  51522349 cagtgtttgctttaataattgtcagtgttgtctcgtcctcaatgat 51522304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 31470170 - 31470114
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  31470170 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 31470114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 31470289 - 31470233
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  31470289 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 31470233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 45241141 - 45241085
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  45241141 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 45241085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 48386215 - 48386271
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  48386215 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 48386271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 48386256 - 48386312
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    ||||||||||||| || |||||||||||| |||| ||  ||||||||||||||||||    
T  48386256 tgttgtctagtcctcactgtttgctttaataattatcagagtgttgtctagtcctca 48386312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 257 - 456
Target Start/End: Complemental strand, 33750855 - 33750654
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||| |||||||||||||| ||| |||||||||||||||||||    
T  33750855 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagaggtgttggaaaacttggagcgtgagctttttggaaattaatttcaatcaaa 33750756  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattg--tcagtgttgtctagtcctcagtgatagtcccta 454  Q
    || |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||    
T  33750755 taattgtttgtattcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtttcagtgttgtctaatcctcagtgatagtcccta 33750656  T
Q  455 gt 456  Q
    ||    
T  33750655 gt 33750654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 256 - 455
Target Start/End: Complemental strand, 50019290 - 50019091
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| |||||||||||||   ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  50019290 ctgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagttgttggaaaacttggagcgtgagctgtttggaaattaatttcaatcaa 50019191  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 455  Q
    ||||||||||||||||  ||||||||||   ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||| |||||||||||||||    
T  50019190 atatttgtttgtattcgatcaaaattgttagtgttgtctagtccccagtgtttgctttaataattgttagttttgtatagtccttagtgatagtccctag 50019091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 256 - 456
Target Start/End: Original strand, 26157948 - 26158148
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    |||||||||||||||||||  ||| ||||||| ||||| || ||||||| ||||||||   ||||||  |||||| ||||||||||||||||||| ||||    
T  26157948 ctgtatgtaaagttaagttctgaagagcatcttgatgaccgaaaaaaagcgttgttggaggagttggtacgtgagttgttttgaaattaatttcagtcaa 26158047  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 455  Q
    ||||||| |||||||| ||||||||||||  |||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||||    
T  26158048 atatttggttgtattcggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgtcagtgttgtctagtcctcagtgatagtccctag 26158147  T
Q  456 t 456  Q
    |    
T  26158148 t 26158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 30416327 - 30416508
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  30416327 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30416426  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  30416427 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 30416508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 42563182 - 42563001
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  42563182 tgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 42563083  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| |   ||||||||||||||   |||||||||||| | ||||||||||||||| ||||    
T  42563082 tatttgtttgtattcagtcaacattattagtgttgtctagtcccgtctgtttgctttaatatttgtcagtgttgtctggtcc 42563001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 10425523 - 10425704
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| | ||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  10425523 tgtatctaaagttaagggacgaagagcatctcgatgaccagaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 10425622  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  10425623 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 10425704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 17468686 - 17468505
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  17468686 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 17468587  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  17468586 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 17468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 25788571 - 25788752
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  25788571 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 25788670  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  25788671 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 25788752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 42599226 - 42599407
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  42599226 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 42599325  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599326 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 47146543 - 47146362
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  47146543 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 47146444  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  47146443 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 47146362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 25830528 - 25830709
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  25830528 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 25830627  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  25830628 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 25830709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 276 - 438
Target Start/End: Original strand, 6046218 - 6046380
Alignment:
Q  276 cgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtc 375  Q
    |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||||||||||||||||| |||    
T  6046218 cgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaatatttgtttgtattccgtc 6046317  T
Q  376 aaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    || ||| ||  |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046318 aacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 456
Target Start/End: Original strand, 33188901 - 33189021
Alignment:
Q  336 ttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctag 435  Q
    |||||||||||| ||||| | ||||||||||||||| |||||||||||   |||||||||| || ||||||||| ||||| |||||||||||||||||||    
T  33188901 ttgaaattaattgcaatccagtatttgtttgtattcggtcaaaattgttagtgttgtctagacctcagtgtttgttttaataattgtcagtgttgtctag 33189000  T
Q  436 tcctcagtgatagtccctagt 456  Q
    ||||| |||||||||||||||    
T  33189001 tcctcggtgatagtccctagt 33189021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 424
Target Start/End: Complemental strand, 21227345 - 21227202
Alignment:
Q  281 agcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaat 380  Q
    ||||||||||||| ||||| |||||| |||||||||||||||  |  || |||||| |||||||||||||||||| ||||||||||||||| |||||| |    
T  21227345 agcatctcgatgaccggaagaaagagatgttgggaaagttgggccaagaactgtttggaaattaatttcaatcaattatttgtttgtattcggtcaaact 21227246  T
Q  381 tgtcgatgttgtctagtccccagtgtttgctttaacaattgtca 424  Q
    || |  ||||||| ||||||| ||||||||||||| ||||||||    
T  21227245 tggcagtgttgtcaagtccccggtgtttgctttaataattgtca 21227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 358 - 438
Target Start/End: Complemental strand, 51429100 - 51429021
Alignment:
Q  358 atttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||| |||||||||||| |||||||||||| |||| ||||| |||||| ||||||||||||||||||||||    
T  51429100 atttgtttgtattcggtcaaaattgtc-atgttgtctagttcccaatgtttactttaataattgtcagtgttgtctagtcc 51429021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 25788781 - 25788832
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25788781 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25788832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 25788928 - 25788979
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25788928 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 25830738 - 25830789
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25830738 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25830789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 25830885 - 25830936
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25830885 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25830936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 47146087 - 47146036
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  47146087 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 47146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 47146253 - 47146202
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  47146253 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 47146202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 42599585 - 42599645
Alignment:
Q  378 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||| ||| |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599585 aattatcggtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 42562820 - 42562769
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  42562820 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 42562769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 42599436 - 42599487
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  42599436 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 42599487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 42599475 - 42599526
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599475 tgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 47146374 - 47146323
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  47146374 tgttgtctagtccgtagtgtttgctttaatatttgtcagtgttgtctagtcc 47146323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 437
Target Start/End: Original strand, 21230393 - 21230574
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||| |||||| | || ||||||||||||| | ||| |||||  |||||| ||||||||  |  || || ||| ||||||||||| ||||||     
T  21230393 tgtatataaagataagttccaaagagcatctcgatgaccagaagaaagatatgttggaaaagttgggccaagaactatttggaaattaattttaatcaat 21230492  T
Q  357 tatttgtttgtattcagtcaaaa-ttgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 437  Q
    ||||||  ||  ||| | | ||| ||| |  || |||| ||||||||||||||||||||| ||||||||||| |||| ||||    
T  21230493 tatttgactgagttccgaccaaacttggcagtgctgtcaagtccccagtgtttgctttaataattgtcagtgatgtcaagtc 21230574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 42562857 - 42562805
Alignment:
Q  389 ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctca 441  Q
    |||||||| || || |||||||||||| |||| ||||||||||||||||||||    
T  42562857 ttgtctagccctcattgtttgctttaataattatcagtgttgtctagtcctca 42562805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 6046450 - 6046501
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046450 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 6046612 - 6046663
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046612 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 6046733 - 6046784
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046733 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 42599555 - 42599606
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||| || |||||||||||| |||| || ||||||||||||||    
T  42599555 tgttgtctagtcctcactgtttgctttaataattatcggtgttgtctagtcc 42599606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 17468517 - 17468461
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  17468517 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 17468461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 30416496 - 30416552
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  30416496 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 30416552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 32240660 - 32240779
Alignment:
Q  67 tgaaccaacagaagaagaaaaatcaaaggtagataaat--aaacaggtcg-aaaagtatattatactcaattaaaaagttgtgcttttaacatgtcaata 163  Q
    |||||||| ||||||||||||||||||||| ||| |||  |||||||| | ||||  ||||| ||  |||||||||| ||  |||||||| |||||| ||    
T  32240660 tgaaccaatagaagaagaaaaatcaaaggttgatcaataaaaacaggtagaaaaaagatattttatgcaattaaaaactt-cgcttttaatatgtcagta 32240758  T
Q  164 tatgtggagcagcctggtctt 184  Q
    |||| ||||| ||||| ||||    
T  32240759 tatgaggagctgcctgatctt 32240779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 42599395 - 42599451
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  42599395 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 42599451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 42599514 - 42599570
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  42599514 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 42599570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 53722784 - 53722743
Alignment:
Q  329 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 370  Q
    ||||||||  ||||||||||||||||||||||||| ||||||    
T  53722784 agctgtttgaaaattaatttcaatcaaatatttgtctgtatt 53722743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 10425816 - 10425871
Alignment:
Q  388 gttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||| || |||||||||||| |||| ||  ||||||||||||||||||    
T  10425816 gttgtctagtcctcactgtttgctttaataattatcagagtgttgtctagtcctca 10425871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 22659119 - 22658938
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| |||||| |||||||   |||||||||||||||||||  |||||||||| |||||||    
T  22659119 tgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaagagctgttggggctgttggagcgtgagctgtttgaaaattaattttaatcaaa 22659020  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||||||| ||  |||||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  22659019 tatttgtttgtattcagtcaaaattatcagtgttgtctagtctcgagtgtttgctttaatatttgtcagtgttgtctagtcc 22658938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 256 - 441
Target Start/End: Original strand, 32128091 - 32128276
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| ||||||||   |||||||||||||||||||||||||||||||||| ||||    
T  32128091 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgttgttggaggagttggagcgtgagctgttttgaaattaatttcagtcaa 32128190  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctca 441  Q
    |||||||||||||||| |||||||||| |  |||||||||||  ||| |||||  ||||| |||||||||||||||||||||||||    
T  32128191 atatttgtttgtattcggtcaaaattgccagtgttgtctagtttccaatgtttattttaataattgtcagtgttgtctagtcctca 32128276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 256 - 437
Target Start/End: Complemental strand, 26814356 - 26814175
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| | ||||||   |||||||||||||||||||||||||||||||||| ||||    
T  26814356 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgctgttggaggagttggagcgtgagctgttttgaaattaatttcagtcaa 26814257  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 437  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||| ||||| |||||| || ||| ||||||||||||||    
T  26814256 atatttgtttgtatttggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgttagtgttgtctagtc 26814175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 36520702 - 36520521
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  36520702 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 36520603  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  36520602 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 36520521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 22193486 - 22193305
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  22193486 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 22193387  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  22193386 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 22193305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 26814186 - 26814117
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    |||||||||||| ||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  26814186 tgttgtctagtctccaatgtttactttaataaatgtcagtgttgtctagtcctcagtgatagtccctagt 26814117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 456
Target Start/End: Original strand, 32128300 - 32128369
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    |||||||||||||| | ||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  32128300 tgttgtctagtccctaatgtttactttaataaatgtcagtgttgtctagtcctcagtgatagtccctagt 32128369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 22193129 - 22193078
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  22193129 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 22193078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 22193276 - 22193225
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  22193276 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 22193225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 22658666 - 22658622
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgt 431  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||    
T  22658666 tgttgtctagtccccactgtttgctttaataattatcagtgttgt 22658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 22658624 - 22658573
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||| |  |||||||||||| |||| |||||||||||||||||    
T  22658624 tgttgtctagtcctccctgtttgctttaataattatcagtgttgtctagtcc 22658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 22658705 - 22658654
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||    
T  22658705 tgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtcc 22658654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 22658744 - 22658693
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||  | |||||||||||| |||| |||||||||||||||||    
T  22658744 tgttgtctagtcctgactgtttgctttaataattatcagtgttgtctagtcc 22658693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 22658783 - 22658731
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcct 439  Q
    ||||||||| || | | |||||||||||| |||| ||||||||||||||||||    
T  22658783 tgttgtctactcacgactgtttgctttaataattatcagtgttgtctagtcct 22658731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 32128252 - 32128312
Alignment:
Q  378 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||  ||||||||||||| || ||||| |||||| || ||| |||||||||||||||    
T  32128252 aattgtcagtgttgtctagtcctcaatgtttactttaataagtgttagtgttgtctagtcc 32128312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 257 - 437
Target Start/End: Complemental strand, 18641477 - 18641297
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| |||||||||||| |||| ||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  18641477 tgtatataaagttaagttccgaagagcatctcgatgaccgaaaaaaagagttgttggagaagttggagcgtgagctgttttgaaattaatttcaatcaaa 18641378  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 437  Q
    |||||||||||||||  |||||||||||  |||||||||||  ||| |||||  ||||| |||||||| |||||| |||||    
T  18641377 tatttgtttgtattcgttcaaaattgtcagtgttgtctagtttccaatgtttagtttaataattgtcaatgttgtttagtc 18641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 406
Target Start/End: Complemental strand, 8221382 - 8221233
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||  |||||||||| |||||||    
T  8221382 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8221283  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgt 406  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| |||||    
T  8221282 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcccaagtgt 8221233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 34840681 - 34840500
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  34840681 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 34840582  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  34840581 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 34840500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 256 - 438
Target Start/End: Original strand, 24917448 - 24917630
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||||| ||||||   |||||||| || |||||||||||||||||||||| ||||    
T  24917448 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagagctgttggaggagttggagagtaagctgttttgaaattaatttcagtcaa 24917547  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||| ||  ||||||||||||  |||||||||||  ||| ||||| |||||| ||||| ||||||||||||||||    
T  24917548 atatttgtttgtgtttggtcaaaattgtcagtgttgtctagtatccaatgtttactttaataattgccagtgttgtctagtcc 24917630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 17959161 - 17959342
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  17959161 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 17959260  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  17959261 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 17959342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 633940 - 633759
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  633940 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 633841  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  633840 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 6378293 - 6378474
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  6378293 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 6378392  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  6378393 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 6378474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 24114307 - 24114211
Alignment:
Q  263 taaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatat 359  Q
    |||||||||||| |||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  24114307 taaagttaagttccgaagagcatctcgatgaccggaagaaagagttgttggaaaagttggagcgtgagctgtttgaaaattaatttcaatcaaatat 24114211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 387 - 456
Target Start/End: Original strand, 24917618 - 24917687
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  24917618 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcctcagtgatagtctctagt 24917687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 8220924 - 8220864
Alignment:
Q  378 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8220924 aattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtctagtcc 8220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 8220954 - 8220897
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtg 444  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  8220954 tgttgtctagtccccagtgtttgctttagtaattgtcagtgttgtctagtccccagtg 8220897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 456
Target Start/End: Complemental strand, 18641317 - 18641239
Alignment:
Q  378 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    ||||||| ||||||| |||||  || ||||| |||||| |||| |||||||||| ||||||||||||||||||||||||    
T  18641317 aattgtcaatgttgtttagtcttcaatgtttactttaataattatcagtgttgtatagtcctcagtgatagtccctagt 18641239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 8220993 - 8220936
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtg 444  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  8220993 tgttctctagtccccagtgtttgctttaataattatcagtgttgtctagtccccagtg 8220936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 633436 - 633385
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633436 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 633583 - 633532
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633583 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 633730 - 633679
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633730 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 6378503 - 6378554
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  6378503 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 6378554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 6378650 - 6378701
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  6378650 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 6378701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 8221199 - 8221148
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  8221199 tgttgtctaatccccagtgtttgctttaataattgtcagtgttgtttagtcc 8221148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 24114207 - 24114148
Alignment:
Q  378 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 437  Q
    |||||||  ||||||||||||||||  ||||||||||| ||||||||||| |||| ||||    
T  24114207 aattgtcagtgttgtctagtccccacagtttgctttaataattgtcagtggtgtcaagtc 24114148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 17959330 - 17959386
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  17959330 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 17959386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 29617392 - 29617573
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||||  ||| ||||||||||||| || || |||||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  29617392 tgtatctaaagttaagttctgaagagcatctcgatgaccgaaagaaagagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 29617491  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||| |||||||||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  29617492 tatttgtttgtatttagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 29617573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 30646727 - 30646908
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||||  ||| ||||||||||||| || |  |||||| |||||| ||||||||||||||||||||||  |||||||||| |||||||    
T  30646727 tgtatctaaagttaagttatgaagagcatctcgatgaccgaatgaaagagctgttggaaaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30646826  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||||||| ||  |||||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  30646827 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcacgagtgtttgctttaatatttgtcagtgttgtctagtcc 30646908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 4579279 - 4579098
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  4579279 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 4579180  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  4579179 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 4579098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 32974221 - 32974402
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  32974221 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 32974320  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | | |||||||||| | ||||||||||||||||||||    
T  32974321 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtcc 32974402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 40890997 - 40890816
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  40890997 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 40890898  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  40890897 tatttgtttgtattcagtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 40890816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 27944826 - 27944645
Alignment:
Q  257 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 356  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  27944826 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 27944727  T
Q  357 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||||||||| ||| ||  || |||||||| || | |||||||||||| | ||||||||||||||||||||    
T  27944726 tatttgtttgtattcagtcaacattatcagtgctgtctagttccgactgtttgctttaatatttgtcagtgttgtctagtcc 27944645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 27406303 - 27406354
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  27406303 tgttgtctagtccctggtgtttgctttaataattgtcagtgttgtctagtcc 27406354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 4579026 - 4578977
Alignment:
Q  389 ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  4579026 ttgtctagtccccaatgtttgctttaatatttgtcagtgttgtctagtcc 4578977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 34918157 - 34918198
Alignment:
Q  329 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 370  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  34918157 agctgtttggaaattaatttcaatcaaatatttgtttgtatt 34918198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 27944534 - 27944483
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    ||||||||||||| || |||||||||||| | ||||||||||||||||||||    
T  27944534 tgttgtctagtcctcactgtttgctttaatatttgtcagtgttgtctagtcc 27944483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 27406275 - 27406315
Alignment:
Q  398 ccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  27406275 ccccagtgtttgctttaataattatcagtgttgtctagtcc 27406315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 29617728 - 29617775
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtcta 434  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||    
T  29617728 tgttgtctagtcccgactgtttgctttaataattatcagtgttgtcta 29617775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 4579110 - 4579054
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 441  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  4579110 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 4579054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 4578989 - 4578934
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 440  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  4578989 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 4578934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 256 - 434
Target Start/End: Complemental strand, 105066 - 104888
Alignment:
Q  256 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 355  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| |  |||||   |||||||| ||||||||||||||||||||||||| ||||    
T  105066 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgcggttggaggagttggagtgtgagctgttttgaaattaatttcagtcaa 104967  T
Q  356 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtcta 434  Q
    |||||||||||||||| ||||||||||||  ||||||||||| |||| |||||  ||||| ||||||||||||||||||    
T  104966 atatttgtttgtattcggtcaaaattgtcagtgttgtctagttcccaatgtttattttaataattgtcagtgttgtcta 104888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 104857 - 104788
Alignment:
Q  387 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 456  Q
    |||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  104857 tgttgtctagtccccaatgtttactttaataaatgtcagtgttgtctagtcctcagtgatagtccctagt 104788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 104905 - 104845
Alignment:
Q  378 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 438  Q
    |||||||  ||||||||| |||||| ||||| |||||| || ||| |||||||||||||||    
T  104905 aattgtcagtgttgtctaatccccaatgtttactttaataagtgttagtgttgtctagtcc 104845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 328 - 446
Target Start/End: Original strand, 7019 - 7136
Alignment:
Q  328 gagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtg 427  Q
    ||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||    
T  7019 gagctgtttggaaattaatttcaatcaaatagttgtttgtat-cggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatg 7117  T
Q  428 ttgtctagtcctcagtgat 446  Q
    |||| ||||||||||||||    
T  7118 ttgtatagtcctcagtgat 7136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 281 - 437
Target Start/End: Original strand, 167228 - 167384
Alignment:
Q  281 agcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaat 380  Q
    ||||| ||||||| ||||| ||| ||||||||| ||||||||  |  ||| ||||| |||||||||||||||||| |||||||||| |||| |||||| |    
T  167228 agcatttcgatgaccggaagaaaaagttgttggaaaagttgggccaagagttgtttggaaattaatttcaatcaagtatttgtttgcattcggtcaaact 167327  T
Q  381 tgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 437  Q
    ||||  |  |||| ||||||||||||||||| ||| ||||||||||| |||| ||||    
T  167328 tgtcagtagtgtcaagtccccagtgtttgctctaataattgtcagtgatgtcaagtc 167384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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