View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13733_low_6 (Length: 417)
Name: NF13733_low_6
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 53604134 - 53604547
Alignment:
| Q |
19 |
gtttctaaacaagtcgatccccgtgagcaggtatcatgttaatagtattggttagtgg---------------------aggaaaaacttatacataaaa |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53604134 |
gtttctaaacaagtcgatccccgtgagcaggtatcatgttaatagtattggttagtggcaatatttttgttaggaaaataggaaaaacttatacataaaa |
53604233 |
T |
|
| Q |
98 |
tatattgattaggnnnnnnnttgaatggcacctaagaacacaataaaaggaagacatgattggaacatagtcaatttataatggatatcttctttcaggg |
197 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
53604234 |
tatattgattaggaaaaaaattgaatggcacctaagaacacaataaaaggaagacatgattggaacatagtcaacttctaatggatatcttctttcaggg |
53604333 |
T |
|
| Q |
198 |
aagggctcaaggttgcatctcaggcatatgttcgattgcacatattgtatctcctttggctttctctccattaacgggtgagtggaaactcataatgtcc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53604334 |
aagggctcaaggttgcatctcaggcatatgttcgattgcacatattgtatctcctttggctttctctccattaacgggtgagtggaaactcataatgtcc |
53604433 |
T |
|
| Q |
298 |
catcatgttcatattattacagaaaat----tattaacaataacttattctcnnnnnnnnnagctctatttctatctgaaaaggcaccttttaattttcc |
393 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53604434 |
catcatgttcatattattacagaaaattatatattaacaaaaacttattctc-ttttttttagctctatttctatctgaaaaggcaccttttaattttcc |
53604532 |
T |
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| Q |
394 |
tggcttcagtataat |
408 |
Q |
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||||||||||||||| |
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| T |
53604533 |
tggcttcagtataat |
53604547 |
T |
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